Variant report

Variant	rs8037100
Chromosome Location	chr15:42580305-42580306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:42563951..42566890-chr15:42577773..42583283,5	K562	blood:
2	chr15:42568840..42573155-chr15:42578082..42582332,4	K562	blood:
3	chr15:42565406..42567153-chr15:42578327..42580640,3	K562	blood:
4	chr15:42564260..42567137-chr15:42576635..42580359,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000103978	Chromatin interaction
ENSG00000214013	Chromatin interaction

Extended variants
information (count: 242 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:237)

rs_ID	r²[population]
rs10518757	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10518763	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11070367	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11070368	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11070369	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11070371	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11631711	0.90[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11631756	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11631823	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11631922	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11635876	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11637010	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11637045	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11856797	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs11856807	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11858453	0.94[ASN][1000 genomes]
rs12324205	1.00[JPT][hapmap]
rs12437815	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12441027	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12592200	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12902924	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12903494	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs12907489	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12913755	0.94[ASN][1000 genomes]
rs12915387	0.82[EUR][1000 genomes]
rs12916523	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12916792	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1659214	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1659215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1659216	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1659220	0.82[CHB][hapmap];0.82[JPT][hapmap];0.94[ASN][1000 genomes]
rs1659221	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs1659223	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1659224	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1659226	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1678997	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1678998	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1678999	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs1679008	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs16973053	1.00[CEU][hapmap]
rs16973054	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16973059	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16973089	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973091	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973093	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973095	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973096	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973097	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973107	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973109	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973132	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973137	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16973148	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973153	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973155	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973171	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973174	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs16973175	1.00[CEU][hapmap]
rs1712391	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs1712407	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17695121	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1801449	0.82[CEU][hapmap]
rs2289293	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2289297	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2412675	0.91[ASN][1000 genomes]
rs2412676	0.91[ASN][1000 genomes]
rs2412677	0.94[ASN][1000 genomes]
rs2412678	0.94[ASN][1000 genomes]
rs2412681	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2412683	0.94[ASN][1000 genomes]
rs2412684	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2412686	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2412689	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2412690	0.82[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2412691	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2412694	0.82[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2412695	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2412696	0.94[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2412697	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2412698	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2412699	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2412700	0.94[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2412701	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2412702	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2412704	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs2412706	0.83[EUR][1000 genomes]
rs2412707	0.83[EUR][1000 genomes]
rs2578651	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2620372	0.94[ASN][1000 genomes]
rs2620374	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2620375	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs28364344	0.83[EUR][1000 genomes]
rs28364345	0.83[EUR][1000 genomes]
rs28364347	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs28364348	0.89[EUR][1000 genomes]
rs28364352	0.83[EUR][1000 genomes]
rs28364354	0.81[EUR][1000 genomes]
rs28364356	0.83[EUR][1000 genomes]
rs28364358	0.83[EUR][1000 genomes]
rs28364360	0.83[EUR][1000 genomes]
rs28364400	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs28364462	0.82[JPT][hapmap]
rs28364475	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs28364491	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs28364495	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs28364503	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs28364504	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs28364508	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs28364509	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs28364511	0.82[CHB][hapmap]
rs28364519	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs28364544	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs28364559	0.82[CHB][hapmap]
rs28489155	0.88[ASN][1000 genomes]
rs2899044	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2918458	1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3098422	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3101895	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34684858	0.83[EUR][1000 genomes]
rs35039186	0.83[EUR][1000 genomes]
rs36023127	0.83[EUR][1000 genomes]
rs3736095	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3736096	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3736097	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs3743002	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3743003	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs3803342	0.82[JPT][hapmap]
rs4244589	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4268723	0.94[ASN][1000 genomes]
rs4293347	0.87[AFR][1000 genomes]
rs4344713	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs4480780	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4556762	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4583208	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4583209	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4595775	0.94[ASN][1000 genomes]
rs4617834	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4923936	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4923937	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4923938	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4923939	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4923941	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4923942	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4923944	0.94[ASN][1000 genomes]
rs4924633	0.82[CHB][hapmap]
rs4924640	0.91[ASN][1000 genomes]
rs4924641	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4924642	1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4924643	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4924649	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924650	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924651	1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924652	1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924655	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924656	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924657	0.82[CHB][hapmap];0.94[ASN][1000 genomes]
rs4924659	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924662	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924663	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924664	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924665	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924666	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924667	1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924668	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924669	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs4924670	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4924671	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs5028173	0.85[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs5028174	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs5029919	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs57052341	0.95[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs598441	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs609660	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs613131	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs633483	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs635617	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs635919	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs6493024	0.91[ASN][1000 genomes]
rs6493026	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6493028	0.94[ASN][1000 genomes]
rs6493029	0.94[ASN][1000 genomes]
rs6493034	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6493037	0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6493038	0.94[ASN][1000 genomes]
rs6493039	0.94[ASN][1000 genomes]
rs6493040	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs6493041	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs663454	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs67384392	0.94[ASN][1000 genomes]
rs685521	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs7161982	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7163345	0.92[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7163941	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7164437	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7164480	0.86[ASN][1000 genomes]
rs7164484	0.91[ASN][1000 genomes]
rs7164874	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7165023	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7166240	0.83[EUR][1000 genomes]
rs7167306	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7168121	0.82[JPT][hapmap]
rs7169279	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7169553	0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.94[ASN][1000 genomes]
rs7170592	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7170744	0.83[EUR][1000 genomes]
rs7170943	0.82[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7171379	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7171709	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7172709	0.93[AFR][1000 genomes]
rs7173358	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7176663	0.91[ASN][1000 genomes]
rs7176724	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7177193	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7177463	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs7178319	0.95[AFR][1000 genomes]
rs7178901	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7182777	0.94[ASN][1000 genomes]
rs7182797	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs7182963	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7183843	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7497367	0.83[EUR][1000 genomes]
rs8023568	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8023678	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8023714	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8024390	0.82[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs8025364	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs8030212	0.94[ASN][1000 genomes]
rs8037627	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8037797	0.81[EUR][1000 genomes]
rs8038153	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs8038467	0.81[EUR][1000 genomes]
rs8040698	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8040720	0.82[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs8043033	0.83[ASN][1000 genomes]
rs8043515	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs9920851	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs9972331	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931223	chr15:41989960-42781757	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
2	nsv529687	chr15:42157320-42621682	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv1049445	chr15:42239738-42830484	Enhancers Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv542366	chr15:42239738-42830484	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv904133	chr15:42528982-42681057	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8037100	LRRC57	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:42567200-42583800	Weak transcription	Fetal Kidney	kidney
2	chr15:42567200-42623600	Weak transcription	Fetal Brain Male	brain
3	chr15:42568400-42604600	Weak transcription	NH-A	brain
4	chr15:42568400-42656000	Weak transcription	Small Intestine	intestine
5	chr15:42568600-42581200	Weak transcription	HUVEC	blood vessel
6	chr15:42568600-42581400	Weak transcription	Stomach Mucosa	stomach
7	chr15:42568600-42583800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:42568600-42584600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr15:42568600-42584800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr15:42568600-42585000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr15:42568600-42585200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr15:42568600-42587000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr15:42568600-42587000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr15:42568600-42593000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr15:42568600-42602600	Weak transcription	Fetal Heart	heart
16	chr15:42568600-42630800	Weak transcription	Dnd41	blood
17	chr15:42568800-42583600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
18	chr15:42569000-42591000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr15:42569400-42602800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr15:42570200-42585600	Strong transcription	Primary B cells from cord blood	blood
21	chr15:42570200-42585800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:42570200-42586600	Strong transcription	Adipose Nuclei	Adipose
23	chr15:42570600-42586600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:42573400-42635800	Weak transcription	Gastric	stomach
25	chr15:42573600-42581000	Weak transcription	Fetal Thymus	thymus
26	chr15:42573600-42584200	Weak transcription	Colon Smooth Muscle	Colon
27	chr15:42573600-42587200	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr15:42573600-42602600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr15:42573800-42592000	Weak transcription	Fetal Brain Female	brain
30	chr15:42573800-42605600	Weak transcription	Pancreas	Pancrea
31	chr15:42574200-42586200	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr15:42574800-42584800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:42575000-42585000	Weak transcription	HSMMtube	muscle
34	chr15:42575200-42584200	Weak transcription	GM12878-XiMat	blood
35	chr15:42575400-42584800	Weak transcription	Psoas Muscle	Psoas
36	chr15:42576000-42592400	Strong transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:42576200-42584800	Weak transcription	Spleen	Spleen
38	chr15:42576200-42585000	Weak transcription	Thymus	Thymus
39	chr15:42576200-42591600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:42576200-42593000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:42576200-42602800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:42576200-42605800	Weak transcription	Esophagus	oesophagus
43	chr15:42576400-42580800	Weak transcription	Left Ventricle	heart
44	chr15:42576400-42581000	Weak transcription	HMEC	breast
45	chr15:42576400-42582400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr15:42576400-42583200	Weak transcription	Brain Angular Gyrus	brain
47	chr15:42576400-42583400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr15:42576400-42583600	Weak transcription	Aorta	Aorta
49	chr15:42576400-42583600	Weak transcription	Right Ventricle	heart
50	chr15:42576400-42585000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links