The 2.0 version of rSNPBase

Variant report

Variant rs7172709
Chromosome Location chr15:42588089-42588090
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:103 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:42567200-42623600 Weak transcription Fetal Brain Male brain
2 chr15:42568400-42604600 Weak transcription NH-A brain
3 chr15:42568400-42656000 Weak transcription Small Intestine intestine
4 chr15:42568600-42593000 Weak transcription HUES64 Cell Line embryonic stem cell
5 chr15:42568600-42602600 Weak transcription Fetal Heart heart
6 chr15:42568600-42630800 Weak transcription Dnd41 blood
7 chr15:42569000-42591000 Strong transcription Primary B cells from peripheral blood blood
8 chr15:42569400-42602800 Weak transcription Primary T killer memory cells from peripheral blood blood
9 chr15:42573400-42635800 Weak transcription Gastric stomach
10 chr15:42573600-42602600 Weak transcription Primary T helper naive cells from peripheral blood blood
11 chr15:42573800-42592000 Weak transcription Fetal Brain Female brain
12 chr15:42573800-42605600 Weak transcription Pancreas Pancrea
13 chr15:42576000-42592400 Strong transcription Skeletal Muscle Female skeletal muscle
14 chr15:42576200-42591600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr15:42576200-42593000 Weak transcription Primary hematopoietic stem cells short term culture blood
16 chr15:42576200-42602800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
17 chr15:42576200-42605800 Weak transcription Esophagus oesophagus
18 chr15:42576400-42602000 Weak transcription Colonic Mucosa Colon
19 chr15:42576400-42620800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr15:42577000-42590000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
21 chr15:42577800-42616200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr15:42578600-42592800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
23 chr15:42579000-42592400 Strong transcription Primary monocytes fromperipheralblood blood
24 chr15:42579000-42592400 Strong transcription Monocytes-CD14+_RO01746 blood
25 chr15:42579200-42588200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
26 chr15:42579200-42589800 Weak transcription Fetal Lung lung
27 chr15:42579200-42592400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
28 chr15:42579200-42593400 Weak transcription Hela-S3 cervix
29 chr15:42580600-42590400 Weak transcription HepG2 liver
30 chr15:42581000-42588200 Strong transcription Liver Liver
31 chr15:42581000-42590800 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
32 chr15:42581000-42590800 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr15:42581600-42601600 Weak transcription Rectal Smooth Muscle rectum
34 chr15:42581800-42602600 Weak transcription HMEC breast
35 chr15:42582000-42601000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr15:42582000-42613400 Weak transcription HUVEC blood vessel
37 chr15:42583400-42590800 Weak transcription Fetal Stomach stomach
38 chr15:42583400-42598800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
39 chr15:42584200-42589800 Weak transcription Fetal Muscle Leg muscle
40 chr15:42584200-42599200 Weak transcription Primary T helper naive cells fromperipheralblood blood
41 chr15:42584400-42599000 Weak transcription Aorta Aorta
42 chr15:42585000-42589600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
43 chr15:42585200-42593000 Weak transcription ES-I3 Cell Line embryonic stem cell
44 chr15:42585200-42593200 Weak transcription Cortex derived primary cultured neurospheres brain
45 chr15:42585400-42589800 Weak transcription Muscle Satellite Cultured Cells --
46 chr15:42585400-42601200 Weak transcription Brain Cingulate Gyrus brain
47 chr15:42585400-42601400 Weak transcription Right Ventricle heart
48 chr15:42585400-42623600 Weak transcription Colon Smooth Muscle Colon
49 chr15:42585600-42588800 Weak transcription GM12878-XiMat blood
50 chr15:42585600-42588800 Weak transcription NHEK skin

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Last update: Aug 31, 2015