Variant report

Variant	rs71652510
Chromosome Location	chr1:93366357-93366358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10874745	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164825	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11582791	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586089	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11586570	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12062315	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12082659	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12726286	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12728322	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12738654	0.90[EUR][1000 genomes]
rs12746956	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12750269	0.93[EUR][1000 genomes]
rs1854797	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2893226	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34041593	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34098754	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34168045	0.84[EUR][1000 genomes]
rs34244251	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35031391	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35051335	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35183060	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58270016	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604026	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66525381	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6657809	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6687931	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514280	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7521417	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554594	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs71652510	FAM69A	cis	Artery Tibial	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93350000-93366400	Weak transcription	Thymus	Thymus
2	chr1:93361800-93366800	Weak transcription	Aorta	Aorta
3	chr1:93363600-93369400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:93364000-93368800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr1:93364000-93373000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:93364400-93366800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr1:93364400-93367000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr1:93364600-93366400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
9	chr1:93364600-93375200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:93365000-93373800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr1:93365200-93366800	ZNF genes & repeats	Primary T cells from cord blood	blood
12	chr1:93365800-93367200	Weak transcription	Primary B cells from cord blood	blood
13	chr1:93365800-93367400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:93365800-93374600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:93366000-93368800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr1:93366000-93369000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr1:93366200-93366400	Active TSS	Liver	Liver
18	chr1:93366200-93366800	Enhancers	Fetal Thymus	thymus
19	chr1:93366200-93369400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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