Variant report

Variant	rs7166817
Chromosome Location	chr15:58848828-58848829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58843977..58845847-chr15:58846386..58849270,2	MCF-7	breast:
2	chr15:58836656..58842196-chr15:58843431..58849915,8	K562	blood:
3	chr15:58838134..58839678-chr15:58847125..58849690,2	K562	blood:
4	chr15:58848705..58850783-chr15:58854087..58856299,2	MCF-7	breast:
5	chr15:58841313..58844294-chr15:58848370..58850226,2	K562	blood:
6	chr15:58846252..58850551-chr15:58852253..58854849,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16940413	1.00[AMR][1000 genomes]
rs57213406	1.00[AMR][1000 genomes]
rs8025872	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3362898	chr15:58705732-58850860	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1043041	chr15:58744505-58876327	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv569601	chr15:58800766-58866156	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1050231	chr15:58848727-58863526	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58840600-58849200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:58840800-58849600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr15:58844600-58860400	Weak transcription	Primary T cells from cord blood	blood
4	chr15:58844800-58850800	Weak transcription	Liver	Liver
5	chr15:58845400-58857200	Weak transcription	Adipose Nuclei	Adipose
6	chr15:58846600-58849000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr15:58847200-58860400	Weak transcription	Thymus	Thymus
8	chr15:58847400-58849000	Enhancers	K562	blood
9	chr15:58847400-58856000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr15:58848000-58849200	Enhancers	A549	lung
11	chr15:58848200-58849000	Enhancers	Brain Anterior Caudate	brain
12	chr15:58848200-58851600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr15:58848200-58852600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:58848200-58852600	Weak transcription	Stomach Mucosa	stomach
15	chr15:58848200-58857400	Weak transcription	Colonic Mucosa	Colon
16	chr15:58848200-58858400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:58848600-58849200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
18	chr15:58848600-58852000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:58848600-58852000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr15:58848800-58849400	Weak transcription	Ovary	ovary
21	chr15:58848800-58849400	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links