Variant report

Variant	rs57213406
Chromosome Location	chr15:58695614-58695615
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58693499..58697991-chr15:58699127..58703288,7	K562	blood:
2	chr15:58695539..58698492-chr15:58699127..58701058,3	K562	blood:
3	chr15:58685079..58687364-chr15:58694601..58697474,2	K562	blood:
4	chr15:58688310..58690112-chr15:58694254..58696812,2	K562	blood:
5	chr15:58694751..58696855-chr15:58722404..58725267,2	K562	blood:

Variant related genes	Relation type
ENSG00000166035	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13329321	1.00[EUR][1000 genomes]
rs13329416	1.00[EUR][1000 genomes]
rs16940111	1.00[EUR][1000 genomes]
rs16940115	1.00[EUR][1000 genomes]
rs16940413	1.00[AMR][1000 genomes]
rs28405107	1.00[EUR][1000 genomes]
rs28449499	1.00[EUR][1000 genomes]
rs28457584	1.00[EUR][1000 genomes]
rs28488446	1.00[EUR][1000 genomes]
rs28621988	1.00[EUR][1000 genomes]
rs28668323	1.00[EUR][1000 genomes]
rs28706087	1.00[EUR][1000 genomes]
rs28849098	1.00[EUR][1000 genomes]
rs28879975	1.00[EUR][1000 genomes]
rs57112568	1.00[EUR][1000 genomes]
rs58293663	1.00[EUR][1000 genomes]
rs59333578	1.00[AMR][1000 genomes]
rs7166817	1.00[AMR][1000 genomes]
rs73418661	1.00[EUR][1000 genomes]
rs9920110	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58690800-58702400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr15:58691400-58697400	Enhancers	K562	blood
3	chr15:58694000-58695800	Enhancers	HMEC	breast
4	chr15:58694200-58695800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:58694200-58696200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr15:58694400-58695800	Enhancers	NHDF-Ad	bronchial
7	chr15:58694800-58702600	Weak transcription	HepG2	liver
8	chr15:58694800-58716000	Weak transcription	Esophagus	oesophagus
9	chr15:58695000-58699400	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links