Variant report

Variant	rs13329416
Chromosome Location	chr15:58638613-58638614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:58637231..58638976-chr15:58639576..58642161,2	K562	blood:
2	chr15:58600524..58602216-chr15:58636813..58638903,2	MCF-7	breast:
3	chr15:58634668..58636179-chr15:58638317..58640694,2	K562	blood:
4	chr15:58625329..58627247-chr15:58636913..58638829,3	MCF-7	breast:
5	chr15:58621484..58623793-chr15:58637642..58640448,2	K562	blood:
6	chr15:58637433..58638976-chr15:58640218..58642161,2	K562	blood:

Variant related genes	Relation type
ENSG00000128918	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13329321	0.91[YRI][hapmap];0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16940111	1.00[EUR][1000 genomes]
rs16940115	1.00[EUR][1000 genomes]
rs28405107	1.00[EUR][1000 genomes]
rs28449499	1.00[EUR][1000 genomes]
rs28457584	1.00[EUR][1000 genomes]
rs28488446	1.00[EUR][1000 genomes]
rs28621988	1.00[EUR][1000 genomes]
rs28668323	1.00[EUR][1000 genomes]
rs28706087	1.00[EUR][1000 genomes]
rs28849098	1.00[EUR][1000 genomes]
rs28879975	1.00[EUR][1000 genomes]
rs57112568	1.00[EUR][1000 genomes]
rs57213406	1.00[EUR][1000 genomes]
rs58293663	1.00[EUR][1000 genomes]
rs73418661	1.00[EUR][1000 genomes]
rs9920110	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047246	chr15:58375607-58707158	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1051058	chr15:58519922-59092530	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv542401	chr15:58519922-59092530	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
4	nsv529717	chr15:58519923-58756814	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1042201	chr15:58520746-58780710	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv569598	chr15:58552606-58852463	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv904266	chr15:58580921-58689187	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv1041779	chr15:58634768-58662280	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:58625000-58643200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:58634400-58640400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr15:58634600-58638800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr15:58636000-58638800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr15:58636800-58640600	Weak transcription	Fetal Kidney	kidney
6	chr15:58637600-58642400	Weak transcription	K562	blood
7	chr15:58638200-58638800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:58638200-58638800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr15:58638200-58638800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:58638200-58638800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:58638200-58638800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:58638200-58638800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:58638200-58638800	Enhancers	Hela-S3	cervix
14	chr15:58638200-58638800	Enhancers	HSMM	muscle
15	chr15:58638200-58638800	Enhancers	NHDF-Ad	bronchial
16	chr15:58638400-58638800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr15:58638400-58638800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr15:58638400-58638800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr15:58638400-58638800	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr15:58638400-58638800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr15:58638400-58638800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr15:58638400-58638800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr15:58638400-58638800	Enhancers	Placenta	Placenta
24	chr15:58638400-58638800	Enhancers	Right Atrium	heart
25	chr15:58638400-58638800	Flanking Active TSS	A549	lung
26	chr15:58638400-58638800	Enhancers	HMEC	breast
27	chr15:58638400-58639000	Enhancers	NHEK	skin
28	chr15:58638400-58640400	Weak transcription	Fetal Thymus	thymus
29	chr15:58638600-58638800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr15:58638600-58638800	Enhancers	Lung	lung
31	chr15:58638600-58638800	Enhancers	HepG2	liver
32	chr15:58638600-58640400	Weak transcription	HSMMtube	muscle

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