Variant report

Variant	rs7180027
Chromosome Location	chr15:34467715-34467716
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34464003..34466494-chr15:34466732..34469495,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11073002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12592585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12595709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2339367	1.00[AMR][1000 genomes]
rs7164072	0.86[AFR][1000 genomes]
rs7179357	1.00[AMR][1000 genomes]
rs7181990	0.86[AFR][1000 genomes]
rs7183322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8035014	1.00[AMR][1000 genomes]
rs9920644	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3507159	chr15:34456709-34485891	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv3507160	chr15:34456709-34485891	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34453600-34474600	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:34454000-34477400	Weak transcription	HSMM	muscle
3	chr15:34454200-34497800	Weak transcription	Osteobl	bone
4	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
5	chr15:34454800-34501000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:34459000-34478400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr15:34464600-34500400	Weak transcription	Hela-S3	cervix
8	chr15:34464800-34477000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr15:34465000-34477800	Weak transcription	Thymus	Thymus
10	chr15:34465600-34468000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr15:34466400-34468000	ZNF genes & repeats	Fetal Lung	lung
12	chr15:34466400-34500400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:34466600-34473400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:34466600-34482800	Weak transcription	NHDF-Ad	bronchial
15	chr15:34466800-34475200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:34466800-34477400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:34466800-34477600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr15:34466800-34477600	Weak transcription	Primary B cells from cord blood	blood
19	chr15:34467000-34470200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr15:34467000-34475200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:34467000-34477200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr15:34467000-34500800	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr15:34467200-34468600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:34467200-34478400	Weak transcription	Lung	lung
25	chr15:34467200-34491400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr15:34467200-34500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:34467400-34467800	Weak transcription	NHEK	skin
28	chr15:34467400-34486200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:34467600-34468200	ZNF genes & repeats	A549	lung

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