Variant report

Variant	rs11073002
Chromosome Location	chr15:34449167-34449168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34448397..34450859-chr15:34513011..34515054,2	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12592585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12595709	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2339367	1.00[AMR][1000 genomes]
rs4780222	1.00[YRI][hapmap]
rs6495645	0.82[YRI][hapmap]
rs7164072	0.86[AFR][1000 genomes]
rs7179357	1.00[AMR][1000 genomes]
rs7180027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7181990	0.86[AFR][1000 genomes]
rs7183322	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031420	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8035014	1.00[AMR][1000 genomes]
rs9920644	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34429800-34456800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr15:34431200-34453200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr15:34433400-34453200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr15:34434000-34453000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr15:34434400-34450200	Strong transcription	Fetal Muscle Trunk	muscle
6	chr15:34435800-34453000	Weak transcription	Stomach Mucosa	stomach
7	chr15:34437200-34449600	Strong transcription	Stomach Smooth Muscle	stomach
8	chr15:34438400-34453000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:34439000-34454600	Weak transcription	Brain Angular Gyrus	brain
10	chr15:34443400-34449400	Weak transcription	Fetal Brain Male	brain
11	chr15:34443400-34450600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:34443400-34453000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr15:34443400-34453400	Weak transcription	Colon Smooth Muscle	Colon
14	chr15:34443400-34456400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr15:34444000-34455400	Weak transcription	Brain Anterior Caudate	brain
16	chr15:34444400-34453200	Weak transcription	Spleen	Spleen
17	chr15:34444400-34456400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr15:34444600-34449600	ZNF genes & repeats	HMEC	breast
19	chr15:34444800-34450400	ZNF genes & repeats	A549	lung
20	chr15:34444800-34453000	Weak transcription	Fetal Thymus	thymus
21	chr15:34444800-34453200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr15:34445000-34449600	ZNF genes & repeats	NHEK	skin
23	chr15:34445200-34453000	Weak transcription	Lung	lung
24	chr15:34445400-34459600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr15:34445600-34449800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr15:34445600-34450000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
27	chr15:34445800-34449400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
28	chr15:34445800-34449600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:34445800-34449600	Strong transcription	Right Ventricle	heart
30	chr15:34445800-34450000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:34445800-34455600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr15:34445800-34459400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
33	chr15:34446200-34450000	ZNF genes & repeats	Primary T cells from cord blood	blood
34	chr15:34446200-34456000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr15:34446400-34449400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
36	chr15:34446400-34449800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr15:34446400-34449800	Strong transcription	Psoas Muscle	Psoas
38	chr15:34446400-34450400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:34446400-34450400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
40	chr15:34446400-34451400	ZNF genes & repeats	Dnd41	blood
41	chr15:34446800-34449800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
42	chr15:34446800-34449800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr15:34447000-34449600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:34447200-34453200	Weak transcription	Brain Substantia Nigra	brain
45	chr15:34447400-34450000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr15:34447400-34450000	Strong transcription	Fetal Intestine Large	intestine
47	chr15:34447400-34451000	Strong transcription	Fetal Lung	lung
48	chr15:34447400-34452200	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr15:34447400-34453200	Weak transcription	Fetal Kidney	kidney
50	chr15:34447600-34453000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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