Variant report

Variant	rs4780222
Chromosome Location	chr15:34437863-34437864
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11073002	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs12592585	0.95[AFR][1000 genomes]
rs12595709	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs6495645	0.82[YRI][hapmap]
rs7164072	0.82[AFR][1000 genomes]
rs7180027	0.95[AFR][1000 genomes]
rs7181990	0.82[AFR][1000 genomes]
rs7183322	0.95[AFR][1000 genomes]
rs8031420	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs9920644	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34416200-34439200	Weak transcription	HUVEC	blood vessel
2	chr15:34417600-34439400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr15:34419400-34441800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:34424400-34446400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr15:34425400-34438200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr15:34425800-34439800	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:34427800-34446400	Weak transcription	Psoas Muscle	Psoas
8	chr15:34428000-34438400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:34428000-34441800	Weak transcription	Esophagus	oesophagus
10	chr15:34428400-34439800	Weak transcription	Thymus	Thymus
11	chr15:34428800-34442400	Weak transcription	Colon Smooth Muscle	Colon
12	chr15:34429000-34442400	Weak transcription	Aorta	Aorta
13	chr15:34429000-34444400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr15:34429200-34446200	Strong transcription	Placenta	Placenta
15	chr15:34429400-34439600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:34429400-34439600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr15:34429400-34445400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr15:34429400-34445600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:34429400-34445800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:34429600-34438200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr15:34429600-34444800	Strong transcription	Adipose Nuclei	Adipose
22	chr15:34429600-34446400	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr15:34429800-34446400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:34429800-34456800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr15:34430000-34438400	Weak transcription	Dnd41	blood
26	chr15:34430200-34439800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr15:34430200-34440200	Weak transcription	Ovary	ovary
28	chr15:34430200-34443000	Weak transcription	Fetal Brain Male	brain
29	chr15:34430200-34443800	Weak transcription	GM12878-XiMat	blood
30	chr15:34430200-34445600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr15:34430200-34446000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr15:34430400-34438400	Weak transcription	Primary B cells from peripheral blood	blood
33	chr15:34430400-34443000	Weak transcription	Fetal Heart	heart
34	chr15:34430600-34446600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr15:34431000-34446200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr15:34431000-34446400	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr15:34431200-34439600	Weak transcription	Fetal Brain Female	brain
38	chr15:34431200-34445600	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr15:34431200-34446400	Weak transcription	K562	blood
40	chr15:34431200-34453200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr15:34431400-34446000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr15:34431400-34446800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr15:34431600-34439600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr15:34431600-34442600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr15:34432000-34440400	Weak transcription	Small Intestine	intestine
46	chr15:34432000-34446400	Weak transcription	Brain Substantia Nigra	brain
47	chr15:34432400-34438400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr15:34432600-34439000	Strong transcription	Fetal Muscle Leg	muscle
49	chr15:34432800-34446400	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr15:34433000-34446600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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