Variant report

Variant	rs7183322
Chromosome Location	chr15:34464689-34464690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11073002	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12592585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12595709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2339367	1.00[AMR][1000 genomes]
rs7164072	0.86[AFR][1000 genomes]
rs7179357	1.00[AMR][1000 genomes]
rs7180027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7181990	0.86[AFR][1000 genomes]
rs8031420	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8035014	1.00[AMR][1000 genomes]
rs9920644	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3507159	chr15:34456709-34485891	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	esv3507160	chr15:34456709-34485891	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34453600-34474600	Weak transcription	Colon Smooth Muscle	Colon
2	chr15:34454000-34477400	Weak transcription	HSMM	muscle
3	chr15:34454200-34497800	Weak transcription	Osteobl	bone
4	chr15:34454600-34501200	Weak transcription	Colonic Mucosa	Colon
5	chr15:34454800-34465600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:34454800-34501000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr15:34458800-34466800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr15:34459000-34478400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:34459600-34464800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:34464000-34465000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:34464000-34465200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:34464400-34464800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:34464400-34465600	ZNF genes & repeats	Dnd41	blood
14	chr15:34464600-34464800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:34464600-34465000	ZNF genes & repeats	Thymus	Thymus
16	chr15:34464600-34500400	Weak transcription	Hela-S3	cervix

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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