Variant report

Variant	rs7180990
Chromosome Location	chr15:59169649-59169650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59168045..59172125-chr15:59189388..59193241,4	K562	blood:
2	chr15:59162668..59165557-chr15:59167625..59170277,3	K562	blood:
3	chr15:59169081..59172963-chr15:59222560..59227013,5	K562	blood:
4	chr15:59169557..59171872-chr15:59175822..59177559,2	K562	blood:
5	chr15:59166234..59168603-chr15:59169493..59172522,3	MCF-7	breast:
6	chr15:59169108..59171726-chr15:59174874..59180386,5	K562	blood:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2899638	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
5	nsv1035640	chr15:59105360-59190930	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv904270	chr15:59140329-59238415	Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv94675	chr15:59164881-59174380	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59147600-59174600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:59154600-59170200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr15:59157400-59170400	Weak transcription	Aorta	Aorta
4	chr15:59157600-59170200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr15:59157600-59170200	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr15:59157600-59170200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:59157600-59170200	Weak transcription	Fetal Brain Female	brain
8	chr15:59157800-59170000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:59157800-59170200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr15:59157800-59170200	Weak transcription	Primary T cells from cord blood	blood
11	chr15:59157800-59170400	Weak transcription	Primary B cells from cord blood	blood
12	chr15:59157800-59170400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr15:59157800-59172600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr15:59158000-59170000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr15:59158000-59170000	Weak transcription	Liver	Liver
16	chr15:59158000-59170000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr15:59158000-59170200	Weak transcription	Left Ventricle	heart
18	chr15:59158000-59170400	Weak transcription	Fetal Lung	lung
19	chr15:59158000-59170400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr15:59158000-59170600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr15:59158000-59171800	Weak transcription	Right Ventricle	heart
22	chr15:59158200-59174600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr15:59158600-59170000	Weak transcription	Ovary	ovary
24	chr15:59160000-59169800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:59160000-59170000	Weak transcription	Spleen	Spleen
26	chr15:59162600-59170000	Weak transcription	Fetal Intestine Large	intestine
27	chr15:59163200-59170000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr15:59163400-59170400	Weak transcription	Brain Anterior Caudate	brain
29	chr15:59165200-59169800	Weak transcription	Esophagus	oesophagus
30	chr15:59165200-59170200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr15:59165400-59170000	Weak transcription	Lung	lung
32	chr15:59165400-59170400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr15:59165800-59170000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:59165800-59170200	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr15:59166000-59170000	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr15:59166000-59170400	Weak transcription	NH-A	brain
37	chr15:59166200-59170200	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:59166200-59170200	Weak transcription	Colonic Mucosa	Colon
39	chr15:59166400-59170600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr15:59166800-59170000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr15:59166800-59170400	Weak transcription	Fetal Brain Male	brain
42	chr15:59166800-59179400	Weak transcription	Fetal Heart	heart
43	chr15:59167000-59170400	Weak transcription	Brain Substantia Nigra	brain
44	chr15:59167000-59170800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr15:59167000-59193200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr15:59167200-59170400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:59167200-59170600	Weak transcription	Colon Smooth Muscle	Colon
48	chr15:59167400-59173600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:59167600-59172000	Strong transcription	GM12878-XiMat	blood
50	chr15:59167600-59176000	Strong transcription	HSMM	muscle

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