Variant report

Variant	rs2899638
Chromosome Location	chr15:59268763-59268764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1613602	1.00[AMR][1000 genomes]
rs1693535	0.83[AFR][1000 genomes]
rs1693536	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2414616	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2955703	1.00[AMR][1000 genomes]
rs392739	1.00[AMR][1000 genomes]
rs413731	1.00[AMR][1000 genomes]
rs4238332	1.00[AMR][1000 genomes]
rs4238333	1.00[AMR][1000 genomes]
rs442321	1.00[AMR][1000 genomes]
rs4444273	1.00[AMR][1000 genomes]
rs4775100	1.00[AMR][1000 genomes]
rs4775104	1.00[AMR][1000 genomes]
rs4775105	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs551943	1.00[AMR][1000 genomes]
rs571030	1.00[AMR][1000 genomes]
rs6494049	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs655312	1.00[AMR][1000 genomes]
rs7163754	1.00[AMR][1000 genomes]
rs7178664	1.00[AMR][1000 genomes]
rs7180990	1.00[ASN][1000 genomes]
rs7183794	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59265600-59279200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr15:59266000-59274400	Enhancers	Primary B cells from peripheral blood	blood
3	chr15:59267000-59268800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
4	chr15:59267000-59268800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr15:59267000-59269000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr15:59267200-59268800	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr15:59267200-59268800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr15:59267200-59269000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:59267400-59268800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:59267400-59268800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr15:59267400-59268800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr15:59267400-59268800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:59267400-59268800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr15:59267400-59269000	Enhancers	Primary hematopoietic stem cells	blood
15	chr15:59267400-59269000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:59267400-59269000	Enhancers	HUVEC	blood vessel
17	chr15:59267400-59269200	Enhancers	Primary B cells from cord blood	blood
18	chr15:59267800-59268800	Enhancers	Primary T cells from cord blood	blood
19	chr15:59268000-59271400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr15:59268000-59271600	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr15:59268000-59273800	Weak transcription	Adipose Nuclei	Adipose
22	chr15:59268400-59268800	Enhancers	GM12878-XiMat	blood
23	chr15:59268400-59272400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr15:59268600-59272000	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr15:59268600-59273000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:59268600-59274000	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr15:59268600-59279000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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