Variant report

Variant	rs4444273
Chromosome Location	chr15:59247794-59247795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59244376..59246814-chr15:59247299..59251469,3	MCF-7	breast:
2	chr15:59223706..59226061-chr15:59247333..59250101,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1613602	1.00[AMR][1000 genomes]
rs1693536	1.00[AMR][1000 genomes]
rs2414616	1.00[AMR][1000 genomes]
rs2899638	1.00[AMR][1000 genomes]
rs2955703	1.00[AMR][1000 genomes]
rs392739	1.00[AMR][1000 genomes]
rs413731	1.00[AMR][1000 genomes]
rs4238332	1.00[AMR][1000 genomes]
rs4238333	1.00[AMR][1000 genomes]
rs429831	1.00[AMR][1000 genomes]
rs442321	1.00[AMR][1000 genomes]
rs4775100	1.00[AMR][1000 genomes]
rs4775104	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4775105	1.00[AMR][1000 genomes]
rs551943	1.00[AMR][1000 genomes]
rs571030	1.00[AMR][1000 genomes]
rs6494049	1.00[AMR][1000 genomes]
rs655312	1.00[AMR][1000 genomes]
rs7163754	1.00[AMR][1000 genomes]
rs7178664	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59242600-59249400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:59242800-59249400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr15:59244600-59249600	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr15:59244800-59249400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr15:59244800-59249600	Weak transcription	Gastric	stomach
6	chr15:59245200-59249400	Weak transcription	GM12878-XiMat	blood
7	chr15:59245400-59249400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:59245400-59249400	Weak transcription	Dnd41	blood
9	chr15:59245400-59249800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr15:59245400-59249800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr15:59245400-59249800	Weak transcription	NHLF	lung
12	chr15:59245400-59249800	Weak transcription	Osteobl	bone
13	chr15:59245400-59255000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:59245600-59249400	Weak transcription	A549	lung
15	chr15:59245600-59249400	Weak transcription	Hela-S3	cervix
16	chr15:59245600-59249600	Weak transcription	Adipose Nuclei	Adipose
17	chr15:59245600-59249800	Weak transcription	NHDF-Ad	bronchial
18	chr15:59245800-59249400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr15:59245800-59249400	Weak transcription	Stomach Mucosa	stomach
20	chr15:59245800-59249400	Weak transcription	K562	blood
21	chr15:59245800-59255000	Weak transcription	HMEC	breast
22	chr15:59246000-59249600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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