Variant report

Variant	rs413731
Chromosome Location	chr15:59166423-59166424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:59165302..59167186-chr15:59171743..59174191,2	MCF-7	breast:
2	chr15:59166234..59168603-chr15:59169493..59172522,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1613602	1.00[AMR][1000 genomes]
rs1693536	1.00[AMR][1000 genomes]
rs2414616	1.00[AMR][1000 genomes]
rs2899638	1.00[AMR][1000 genomes]
rs2955703	1.00[AMR][1000 genomes]
rs392739	1.00[AMR][1000 genomes]
rs4238332	1.00[AMR][1000 genomes]
rs4238333	1.00[AMR][1000 genomes]
rs429831	1.00[AMR][1000 genomes]
rs442321	1.00[AMR][1000 genomes]
rs4444273	1.00[AMR][1000 genomes]
rs4775100	1.00[AMR][1000 genomes]
rs4775104	1.00[AMR][1000 genomes]
rs4775105	1.00[AMR][1000 genomes]
rs551943	1.00[AMR][1000 genomes]
rs571030	1.00[AMR][1000 genomes]
rs6494049	1.00[AMR][1000 genomes]
rs655312	1.00[AMR][1000 genomes]
rs7163754	1.00[AMR][1000 genomes]
rs7178664	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
5	nsv1035640	chr15:59105360-59190930	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv904270	chr15:59140329-59238415	Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv94675	chr15:59164881-59174380	Strong transcription Weak transcription Genic enhancers Enhancers	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59120000-59169000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:59145000-59166600	Weak transcription	HSMMtube	muscle
3	chr15:59147200-59169000	Weak transcription	K562	blood
4	chr15:59147600-59174600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:59148000-59168600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:59148000-59169000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:59154600-59170200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr15:59157200-59168600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr15:59157400-59168800	Weak transcription	Brain Angular Gyrus	brain
10	chr15:59157400-59170400	Weak transcription	Aorta	Aorta
11	chr15:59157600-59169000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr15:59157600-59169400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr15:59157600-59169400	Weak transcription	Brain Germinal Matrix	brain
14	chr15:59157600-59170200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr15:59157600-59170200	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr15:59157600-59170200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr15:59157600-59170200	Weak transcription	Fetal Brain Female	brain
18	chr15:59157800-59169000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr15:59157800-59169400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:59157800-59169400	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr15:59157800-59170000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:59157800-59170200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr15:59157800-59170200	Weak transcription	Primary T cells from cord blood	blood
24	chr15:59157800-59170400	Weak transcription	Primary B cells from cord blood	blood
25	chr15:59157800-59170400	Weak transcription	Primary hematopoietic stem cells	blood
26	chr15:59157800-59172600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr15:59158000-59167600	Weak transcription	Thymus	Thymus
28	chr15:59158000-59168400	Weak transcription	Gastric	stomach
29	chr15:59158000-59168400	Weak transcription	Stomach Smooth Muscle	stomach
30	chr15:59158000-59168800	Weak transcription	Adipose Nuclei	Adipose
31	chr15:59158000-59169000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr15:59158000-59169000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:59158000-59169400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr15:59158000-59170000	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr15:59158000-59170000	Weak transcription	Liver	Liver
36	chr15:59158000-59170000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr15:59158000-59170200	Weak transcription	Left Ventricle	heart
38	chr15:59158000-59170400	Weak transcription	Fetal Lung	lung
39	chr15:59158000-59170400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr15:59158000-59170600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr15:59158000-59171800	Weak transcription	Right Ventricle	heart
42	chr15:59158200-59168200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr15:59158200-59168200	Weak transcription	Fetal Thymus	thymus
44	chr15:59158200-59168400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr15:59158200-59168600	Weak transcription	Stomach Mucosa	stomach
46	chr15:59158200-59174600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr15:59158400-59169200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr15:59158600-59170000	Weak transcription	Ovary	ovary
49	chr15:59158800-59168600	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr15:59159800-59168600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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