Variant report

Variant	rs7178664
Chromosome Location	chr15:59195959-59195960
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59195168..59198087-chr15:59207796..59210438,2	MCF-7	breast:
2	chr15:59194271..59195983-chr15:59200756..59202760,2	K562	blood:
3	chr15:59194003..59196406-chr15:59203765..59205746,2	K562	blood:

Variant related genes	Relation type
ENSG00000137776	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1613602	1.00[AMR][1000 genomes]
rs1693536	1.00[AMR][1000 genomes]
rs2414616	1.00[AMR][1000 genomes]
rs2899638	1.00[AMR][1000 genomes]
rs2955703	1.00[AMR][1000 genomes]
rs392739	1.00[AMR][1000 genomes]
rs413731	1.00[AMR][1000 genomes]
rs4238332	1.00[AMR][1000 genomes]
rs4238333	1.00[AMR][1000 genomes]
rs429831	1.00[AMR][1000 genomes]
rs442321	1.00[AMR][1000 genomes]
rs4444273	1.00[AMR][1000 genomes]
rs4775100	1.00[AMR][1000 genomes]
rs4775104	1.00[AMR][1000 genomes]
rs4775105	1.00[AMR][1000 genomes]
rs551943	1.00[AMR][1000 genomes]
rs571030	1.00[AMR][1000 genomes]
rs6494049	1.00[AMR][1000 genomes]
rs655312	1.00[AMR][1000 genomes]
rs7163754	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
5	nsv904270	chr15:59140329-59238415	Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
6	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59168200-59202200	Strong transcription	Fetal Thymus	thymus
2	chr15:59168400-59206600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr15:59168400-59209600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr15:59168600-59202400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:59168600-59209800	Strong transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:59168600-59220000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr15:59169000-59209800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr15:59169000-59210600	Strong transcription	HUES48 Cell Line	embryonic stem cell
9	chr15:59169200-59223200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:59169400-59210000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr15:59169400-59211800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:59170000-59209400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr15:59170200-59210000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr15:59170800-59224200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr15:59171200-59200200	Strong transcription	Placenta	Placenta
16	chr15:59179800-59224200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:59180800-59216400	Weak transcription	Stomach Mucosa	stomach
18	chr15:59182200-59224200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:59187000-59199000	Weak transcription	Psoas Muscle	Psoas
20	chr15:59192200-59223400	Weak transcription	Right Ventricle	heart
21	chr15:59192600-59198600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr15:59192600-59199600	Weak transcription	Esophagus	oesophagus
23	chr15:59192600-59205800	Weak transcription	Colon Smooth Muscle	Colon
24	chr15:59192600-59223400	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr15:59192800-59196200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr15:59192800-59198400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr15:59192800-59198800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr15:59192800-59201000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr15:59192800-59221200	Weak transcription	Small Intestine	intestine
30	chr15:59192800-59223200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr15:59192800-59224200	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:59193000-59196000	Weak transcription	Gastric	stomach
33	chr15:59193000-59196000	Weak transcription	A549	lung
34	chr15:59193000-59197800	Weak transcription	Fetal Lung	lung
35	chr15:59193000-59198000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr15:59193000-59198200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:59193000-59198600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:59193000-59199000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr15:59193000-59199000	Weak transcription	NHEK	skin
40	chr15:59193000-59199400	Weak transcription	Brain Hippocampus Middle	brain
41	chr15:59193000-59199400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr15:59193000-59200800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr15:59193000-59201600	Weak transcription	Brain Substantia Nigra	brain
44	chr15:59193000-59201800	Weak transcription	Brain Angular Gyrus	brain
45	chr15:59193000-59201800	Weak transcription	Brain Anterior Caudate	brain
46	chr15:59193000-59203800	Weak transcription	Stomach Smooth Muscle	stomach
47	chr15:59193000-59207000	Weak transcription	Brain Germinal Matrix	brain
48	chr15:59193000-59210000	Weak transcription	Ovary	ovary
49	chr15:59193000-59211200	Weak transcription	Pancreas	Pancrea
50	chr15:59193000-59217000	Weak transcription	Rectal Smooth Muscle	rectum

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