Variant report

Variant	rs1613602
Chromosome Location	chr15:59294617-59294618
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:59287060..59290371-chr15:59290722..59294803,5	K562	blood:
2	chr15:59278836..59281901-chr15:59291877..59295229,4	K562	blood:
3	chr15:59291895..59294807-chr15:59308737..59310963,2	K562	blood:
4	chr15:59287410..59289323-chr15:59293303..59295381,3	K562	blood:
5	chr15:59293658..59297788-chr15:59301854..59304801,3	K562	blood:

Variant related genes	Relation type
ENSG00000157450	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1693536	1.00[AMR][1000 genomes]
rs2414616	1.00[AMR][1000 genomes]
rs2899638	1.00[AMR][1000 genomes]
rs2955703	1.00[AMR][1000 genomes]
rs392739	1.00[AMR][1000 genomes]
rs413731	1.00[AMR][1000 genomes]
rs4238332	1.00[AMR][1000 genomes]
rs4238333	1.00[AMR][1000 genomes]
rs442321	1.00[AMR][1000 genomes]
rs4444273	1.00[AMR][1000 genomes]
rs4775100	1.00[AMR][1000 genomes]
rs4775104	1.00[AMR][1000 genomes]
rs4775105	1.00[AMR][1000 genomes]
rs551943	1.00[AMR][1000 genomes]
rs571030	1.00[AMR][1000 genomes]
rs6494049	1.00[AMR][1000 genomes]
rs655312	1.00[AMR][1000 genomes]
rs7163736	0.93[MKK][hapmap]
rs7163754	1.00[AMR][1000 genomes]
rs7178664	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
3	esv1850946	chr15:59174539-59429160	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
4	nsv904271	chr15:59249584-59393011	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv520679	chr15:59268410-59376531	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv520872	chr15:59268410-59395184	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59280800-59295200	Weak transcription	Gastric	stomach
2	chr15:59280800-59308800	Weak transcription	Esophagus	oesophagus
3	chr15:59280800-59327800	Weak transcription	Small Intestine	intestine
4	chr15:59281200-59352600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:59281400-59294800	Weak transcription	Psoas Muscle	Psoas
6	chr15:59281400-59305800	Weak transcription	Brain Substantia Nigra	brain
7	chr15:59281400-59323200	Weak transcription	Ovary	ovary
8	chr15:59281400-59347800	Weak transcription	Colonic Mucosa	Colon
9	chr15:59281600-59311000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:59281800-59297800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr15:59281800-59352200	Weak transcription	Aorta	Aorta
12	chr15:59281800-59353400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr15:59282000-59305800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr15:59282000-59323000	Weak transcription	Fetal Lung	lung
15	chr15:59282000-59323200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr15:59282000-59323200	Weak transcription	Fetal Kidney	kidney
17	chr15:59282400-59296800	Weak transcription	NH-A	brain
18	chr15:59282400-59297400	Weak transcription	HMEC	breast
19	chr15:59282400-59305400	Weak transcription	Fetal Heart	heart
20	chr15:59282400-59308600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr15:59282400-59323200	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr15:59282400-59323400	Weak transcription	NHLF	lung
23	chr15:59282600-59297600	Weak transcription	NHDF-Ad	bronchial
24	chr15:59282600-59306400	Weak transcription	Brain Angular Gyrus	brain
25	chr15:59282800-59297200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr15:59283600-59296200	Weak transcription	HepG2	liver
27	chr15:59283600-59305600	Weak transcription	Stomach Mucosa	stomach
28	chr15:59283800-59295000	Weak transcription	Primary T cells from cord blood	blood
29	chr15:59283800-59296400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr15:59283800-59297200	Weak transcription	NHEK	skin
31	chr15:59283800-59305600	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr15:59283800-59313400	Weak transcription	Right Atrium	heart
33	chr15:59283800-59329000	Weak transcription	Pancreas	Pancrea
34	chr15:59283800-59344800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr15:59283800-59359000	Weak transcription	Fetal Brain Male	brain
36	chr15:59284000-59296600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr15:59284000-59305600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr15:59284200-59299000	Weak transcription	Spleen	Spleen
39	chr15:59284400-59296200	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr15:59284400-59297400	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr15:59284400-59297800	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr15:59284600-59295200	Weak transcription	Lung	lung
43	chr15:59284600-59298600	Weak transcription	Hela-S3	cervix
44	chr15:59284600-59305600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr15:59284600-59308800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:59284600-59323000	Weak transcription	Fetal Muscle Trunk	muscle
47	chr15:59284800-59297800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
48	chr15:59284800-59308800	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr15:59284800-59323000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr15:59285000-59295200	Weak transcription	Fetal Brain Female	brain

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