Variant report

Variant	rs7191804
Chromosome Location	chr16:81458032-81458033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81457019..81459351-chr16:81477437..81480635,4	K562	blood:
2	chr16:81456230..81458519-chr16:81478513..81480635,2	K562	blood:
3	chr16:81450805..81453422-chr16:81457047..81459629,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153815	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11866931	0.89[EUR][1000 genomes]
rs13335052	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16955319	0.89[EUR][1000 genomes]
rs34441922	0.89[EUR][1000 genomes]
rs34797363	0.89[EUR][1000 genomes]
rs4613060	0.89[EUR][1000 genomes]
rs7186064	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7186540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7188374	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7191231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7201488	1.00[EUR][1000 genomes]
rs7205597	0.89[EUR][1000 genomes]
rs72835160	0.89[EUR][1000 genomes]
rs72835164	0.89[EUR][1000 genomes]
rs72835165	0.89[EUR][1000 genomes]
rs72835171	0.89[EUR][1000 genomes]
rs72835178	1.00[EUR][1000 genomes]
rs8046466	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9888977	0.89[EUR][1000 genomes]
rs9889135	0.89[EUR][1000 genomes]
rs9889175	0.89[EUR][1000 genomes]
rs9889186	0.89[EUR][1000 genomes]
rs9889196	0.89[EUR][1000 genomes]
rs9927898	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9934987	0.90[EUR][1000 genomes]
rs9935485	0.89[EUR][1000 genomes]
rs9940535	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1061359	chr16:81349826-81471867	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv542992	chr16:81349826-81471867	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81453000-81462800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:81455400-81458400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr16:81455600-81465400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr16:81457800-81458600	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr16:81457800-81459200	Enhancers	Primary B cells from peripheral blood	blood
6	chr16:81457800-81459400	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr16:81457800-81459600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr16:81458000-81458800	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr16:81458000-81459000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr16:81458000-81459400	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links