Variant report

Variant	rs7201488
Chromosome Location	chr16:81464394-81464395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81462213..81464618-chr16:81468888..81470732,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11866931	0.89[EUR][1000 genomes]
rs13335052	0.89[EUR][1000 genomes]
rs16955319	0.89[EUR][1000 genomes]
rs34441922	0.89[EUR][1000 genomes]
rs34797363	0.89[EUR][1000 genomes]
rs4613060	0.89[EUR][1000 genomes]
rs7186064	1.00[EUR][1000 genomes]
rs7186540	1.00[EUR][1000 genomes]
rs7188374	0.89[EUR][1000 genomes]
rs7191231	1.00[EUR][1000 genomes]
rs7191804	1.00[EUR][1000 genomes]
rs7205597	0.89[EUR][1000 genomes]
rs72835160	0.89[EUR][1000 genomes]
rs72835164	0.89[EUR][1000 genomes]
rs72835165	0.89[EUR][1000 genomes]
rs72835171	0.89[EUR][1000 genomes]
rs72835178	1.00[EUR][1000 genomes]
rs8046466	1.00[EUR][1000 genomes]
rs9888977	0.89[EUR][1000 genomes]
rs9889135	0.89[EUR][1000 genomes]
rs9889175	0.89[EUR][1000 genomes]
rs9889186	0.89[EUR][1000 genomes]
rs9889196	0.89[EUR][1000 genomes]
rs9927898	1.00[EUR][1000 genomes]
rs9934987	0.90[EUR][1000 genomes]
rs9935485	0.89[EUR][1000 genomes]
rs9940535	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1061359	chr16:81349826-81471867	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv542992	chr16:81349826-81471867	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81455600-81465400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr16:81458800-81465400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:81459200-81465200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr16:81459400-81465200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr16:81459400-81465600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr16:81461000-81465400	Weak transcription	Spleen	Spleen
7	chr16:81463000-81464800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr16:81463000-81464800	Weak transcription	Fetal Thymus	thymus
9	chr16:81463000-81464800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr16:81463000-81465000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr16:81463000-81465000	Weak transcription	NHDF-Ad	bronchial
12	chr16:81463000-81465200	Weak transcription	Placenta	Placenta
13	chr16:81463000-81465400	Weak transcription	Brain Substantia Nigra	brain
14	chr16:81463000-81466600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr16:81463200-81464600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr16:81463200-81464600	Weak transcription	Liver	Liver
17	chr16:81463200-81464800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr16:81463200-81464800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr16:81463200-81464800	Weak transcription	Adipose Nuclei	Adipose
20	chr16:81463200-81464800	Weak transcription	Fetal Muscle Leg	muscle
21	chr16:81463200-81464800	Weak transcription	GM12878-XiMat	blood
22	chr16:81463200-81464800	Weak transcription	K562	blood
23	chr16:81463200-81464800	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr16:81463200-81464800	Weak transcription	Osteobl	bone
25	chr16:81463200-81465000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr16:81463200-81465200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr16:81463200-81465200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr16:81463200-81465200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr16:81463200-81465800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr16:81463200-81466600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr16:81463200-81466600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr16:81463200-81466800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr16:81463200-81469400	Weak transcription	Pancreas	Pancrea
34	chr16:81463200-81471600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr16:81463400-81464800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr16:81463400-81464800	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr16:81463400-81464800	Weak transcription	A549	lung
38	chr16:81463400-81464800	Weak transcription	Dnd41	blood
39	chr16:81463400-81465200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr16:81463400-81465200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr16:81463600-81466800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr16:81464200-81464600	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links