Variant report

Variant	rs9934987
Chromosome Location	chr16:81463326-81463327
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81462213..81464618-chr16:81468888..81470732,2	MCF-7	breast:
2	chr16:81452827..81454808-chr16:81460836..81463803,3	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16955319	0.83[AMR][1000 genomes]
rs34441922	0.83[AMR][1000 genomes]
rs34797363	0.83[AMR][1000 genomes]
rs7186064	0.90[EUR][1000 genomes]
rs7186540	0.90[EUR][1000 genomes]
rs7191231	0.90[EUR][1000 genomes]
rs7191804	0.90[EUR][1000 genomes]
rs7201488	0.90[EUR][1000 genomes]
rs72835164	0.83[AMR][1000 genomes]
rs72835165	0.83[AMR][1000 genomes]
rs72835171	0.83[AMR][1000 genomes]
rs72835178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8046466	0.90[EUR][1000 genomes]
rs9927898	0.90[EUR][1000 genomes]
rs9940535	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532569	chr16:80980356-81700149	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv1058519	chr16:81177767-81735333	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
3	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
4	nsv1061359	chr16:81349826-81471867	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
5	nsv542992	chr16:81349826-81471867	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81455600-81465400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr16:81458800-81465400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr16:81459200-81465200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr16:81459400-81465200	Weak transcription	Primary hematopoietic stem cells	blood
5	chr16:81459400-81465600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr16:81461000-81465400	Weak transcription	Spleen	Spleen
7	chr16:81462600-81463400	Enhancers	A549	lung
8	chr16:81462800-81463400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr16:81462800-81463400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr16:81462800-81463400	Enhancers	Dnd41	blood
11	chr16:81462800-81463600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr16:81463000-81464800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr16:81463000-81464800	Weak transcription	Fetal Thymus	thymus
14	chr16:81463000-81464800	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr16:81463000-81465000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr16:81463000-81465000	Weak transcription	NHDF-Ad	bronchial
17	chr16:81463000-81465200	Weak transcription	Placenta	Placenta
18	chr16:81463000-81465400	Weak transcription	Brain Substantia Nigra	brain
19	chr16:81463000-81466600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr16:81463200-81463800	Enhancers	HepG2	liver
21	chr16:81463200-81464600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr16:81463200-81464600	Weak transcription	Liver	Liver
23	chr16:81463200-81464800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr16:81463200-81464800	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr16:81463200-81464800	Weak transcription	Adipose Nuclei	Adipose
26	chr16:81463200-81464800	Weak transcription	Fetal Muscle Leg	muscle
27	chr16:81463200-81464800	Weak transcription	GM12878-XiMat	blood
28	chr16:81463200-81464800	Weak transcription	K562	blood
29	chr16:81463200-81464800	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr16:81463200-81464800	Weak transcription	Osteobl	bone
31	chr16:81463200-81465000	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr16:81463200-81465200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr16:81463200-81465200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr16:81463200-81465200	Weak transcription	Stomach Smooth Muscle	stomach
35	chr16:81463200-81465800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr16:81463200-81466600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr16:81463200-81466600	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr16:81463200-81466800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr16:81463200-81469400	Weak transcription	Pancreas	Pancrea
40	chr16:81463200-81471600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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