Variant report

Variant	rs7195682
Chromosome Location	chr16:65055030-65055031
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1025312	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10459793	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11640810	0.81[ASN][1000 genomes]
rs11647164	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12708869	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12923000	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1607696	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1826821	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs185393	0.94[ASN][1000 genomes]
rs2331446	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2860056	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35153	0.81[ASN][1000 genomes]
rs35181	0.96[ASN][1000 genomes]
rs35183	0.94[ASN][1000 genomes]
rs35184	0.94[ASN][1000 genomes]
rs35186	0.94[ASN][1000 genomes]
rs35187	0.94[ASN][1000 genomes]
rs35190	0.94[ASN][1000 genomes]
rs35197	0.94[ASN][1000 genomes]
rs3760056	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3826240	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4967879	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4967881	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs973199	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9930786	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65039000-65061200	Weak transcription	Aorta	Aorta
2	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
3	chr16:65039200-65068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr16:65039600-65079800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr16:65039800-65057400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr16:65040600-65086000	Weak transcription	HMEC	breast
7	chr16:65041000-65059200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr16:65041200-65072400	Weak transcription	Fetal Kidney	kidney
9	chr16:65044600-65064000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr16:65044600-65069000	Weak transcription	Brain Germinal Matrix	brain
11	chr16:65046400-65075600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr16:65047200-65058800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr16:65047200-65059000	Weak transcription	HSMMtube	muscle
14	chr16:65047200-65061200	Weak transcription	NHLF	lung
15	chr16:65047200-65078400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr16:65047400-65058800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr16:65050000-65056800	Weak transcription	Fetal Stomach	stomach
18	chr16:65050400-65056800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:65050800-65061200	Weak transcription	Brain Anterior Caudate	brain
20	chr16:65051000-65062400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr16:65051000-65071200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr16:65051200-65062600	Weak transcription	Brain Hippocampus Middle	brain
23	chr16:65051200-65062600	Weak transcription	Brain Substantia Nigra	brain
24	chr16:65051200-65063400	Weak transcription	Brain Cingulate Gyrus	brain
25	chr16:65051200-65063400	Weak transcription	Fetal Brain Male	brain
26	chr16:65052200-65056400	Weak transcription	Ovary	ovary
27	chr16:65052200-65070800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr16:65052600-65056600	Weak transcription	Osteobl	bone
29	chr16:65052800-65056400	Weak transcription	Fetal Lung	lung
30	chr16:65052800-65057000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr16:65052800-65057000	Weak transcription	NH-A	brain
32	chr16:65052800-65058600	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr16:65052800-65068800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr16:65053000-65062000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr16:65053000-65065000	Weak transcription	HSMM	muscle
36	chr16:65053000-65065200	Weak transcription	NHDF-Ad	bronchial
37	chr16:65053000-65069000	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr16:65053200-65055200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr16:65053800-65057400	Weak transcription	HUVEC	blood vessel
40	chr16:65054000-65056600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr16:65054800-65055200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr16:65055000-65055200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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