Variant report

Variant	rs35186
Chromosome Location	chr16:65035279-65035280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1025312	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10459793	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11640810	0.83[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs11647164	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12708869	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs12923000	0.95[ASN][1000 genomes]
rs1607696	0.86[ASN][1000 genomes]
rs1826821	0.93[ASN][1000 genomes]
rs185393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280394	0.90[JPT][hapmap]
rs2331446	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2860056	0.93[ASN][1000 genomes]
rs35141	1.00[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35143	1.00[CEU][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35153	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35181	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35183	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35184	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35187	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35190	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35197	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3760056	1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs3826240	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4967879	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4967881	0.93[ASN][1000 genomes]
rs7195682	0.94[ASN][1000 genomes]
rs973199	0.96[ASN][1000 genomes]
rs9930786	1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35186	RPL13AP6	trans	parietal	SCAN

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65000800-65051000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:65014200-65040200	Weak transcription	Fetal Intestine Small	intestine
3	chr16:65016200-65040200	Weak transcription	Left Ventricle	heart
4	chr16:65017200-65041800	Weak transcription	Colon Smooth Muscle	Colon
5	chr16:65018000-65035600	Strong transcription	HSMM	muscle
6	chr16:65018800-65035600	Strong transcription	Osteobl	bone
7	chr16:65021200-65038200	Weak transcription	Brain Germinal Matrix	brain
8	chr16:65022000-65041200	Weak transcription	Fetal Heart	heart
9	chr16:65022200-65037200	Weak transcription	Fetal Intestine Large	intestine
10	chr16:65023400-65043200	Strong transcription	Fetal Lung	lung
11	chr16:65023600-65039600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr16:65025200-65037200	Weak transcription	Spleen	Spleen
13	chr16:65025800-65051400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr16:65026000-65035800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr16:65026000-65037800	Weak transcription	Aorta	Aorta
16	chr16:65026000-65038600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr16:65027000-65036000	Weak transcription	Fetal Brain Female	brain
18	chr16:65027200-65035600	Weak transcription	HUVEC	blood vessel
19	chr16:65029000-65037600	Weak transcription	Fetal Kidney	kidney
20	chr16:65029800-65035600	Strong transcription	NHDF-Ad	bronchial
21	chr16:65029800-65035800	Strong transcription	Fetal Muscle Leg	muscle
22	chr16:65030000-65035800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr16:65030200-65035600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr16:65030400-65035400	Strong transcription	NH-A	brain
25	chr16:65032200-65043400	Weak transcription	Fetal Brain Male	brain
26	chr16:65032400-65035800	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr16:65032400-65037800	Weak transcription	HMEC	breast
28	chr16:65032600-65037600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr16:65032600-65037600	Weak transcription	Lung	lung
30	chr16:65032600-65038400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr16:65032800-65035600	Weak transcription	Brain Cingulate Gyrus	brain
32	chr16:65032800-65035800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr16:65032800-65037200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr16:65032800-65037200	Weak transcription	Fetal Muscle Trunk	muscle
35	chr16:65033000-65037200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr16:65033800-65040400	Strong transcription	Stomach Smooth Muscle	stomach
37	chr16:65034200-65037600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr16:65034400-65035800	Weak transcription	NHLF	lung
39	chr16:65034600-65037200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr16:65034800-65035600	Weak transcription	Placenta	Placenta
41	chr16:65034800-65037200	Weak transcription	Fetal Stomach	stomach
42	chr16:65034800-65037800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr16:65035000-65036000	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr16:65035000-65036000	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr16:65035000-65036400	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr16:65035000-65036400	Enhancers	Brain Substantia Nigra	brain
47	chr16:65035000-65036600	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr16:65035200-65035400	Enhancers	HUES64 Cell Line	embryonic stem cell
49	chr16:65035200-65035400	Genic enhancers	HSMMtube	muscle
50	chr16:65035200-65036200	Strong transcription	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links