Variant report

Variant	rs35143
Chromosome Location	chr16:64986233-64986234
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1025312	0.95[JPT][hapmap]
rs10459793	0.95[JPT][hapmap]
rs11640810	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs11647164	0.84[CHD][hapmap];0.95[JPT][hapmap]
rs12708869	0.84[CHD][hapmap];0.86[JPT][hapmap]
rs12931546	0.91[ASN][1000 genomes]
rs1402020	0.81[YRI][hapmap]
rs1540412	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1607696	0.83[ASN][1000 genomes]
rs1845849	0.97[ASN][1000 genomes]
rs185393	1.00[CEU][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2280394	0.89[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs2331446	0.95[JPT][hapmap]
rs257340	0.81[YRI][hapmap]
rs35141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35153	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35181	1.00[CEU][hapmap];0.84[CHD][hapmap];0.86[JPT][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35183	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35184	1.00[CEU][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35186	1.00[CEU][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35187	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35190	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35197	1.00[CEU][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35201	0.81[LWK][hapmap];0.82[YRI][hapmap]
rs35213	0.81[LWK][hapmap];0.82[YRI][hapmap]
rs35229	0.81[LWK][hapmap];0.81[YRI][hapmap]
rs35230	0.82[YRI][hapmap]
rs35232	0.80[YRI][hapmap]
rs3760056	0.81[CHD][hapmap];0.95[JPT][hapmap]
rs3826240	0.95[JPT][hapmap]
rs3891307	0.97[ASN][1000 genomes]
rs4967877	0.88[ASN][1000 genomes]
rs4967879	0.84[CHD][hapmap];0.95[JPT][hapmap]
rs9930786	0.80[CHD][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv572901	chr16:64964233-64990187	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64979000-64998000	Weak transcription	HMEC	breast
2	chr16:64980000-65005200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:64980800-64991200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:64981000-64986400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
5	chr16:64981200-64986400	Strong transcription	Fetal Lung	lung
6	chr16:64983000-65003200	Weak transcription	Brain Substantia Nigra	brain
7	chr16:64983200-65004400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr16:64984400-64987800	Weak transcription	Fetal Kidney	kidney
9	chr16:64984400-65002400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr16:64984600-65002200	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr16:64984800-64986600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr16:64984800-65004600	Weak transcription	Fetal Brain Female	brain
13	chr16:64984800-65005400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr16:64985000-64991800	Weak transcription	Lung	lung
15	chr16:64985000-65002200	Weak transcription	Brain Anterior Caudate	brain
16	chr16:64985000-65002400	Weak transcription	Brain Angular Gyrus	brain
17	chr16:64985000-65004400	Weak transcription	Fetal Intestine Large	intestine
18	chr16:64985000-65005200	Weak transcription	Brain Germinal Matrix	brain
19	chr16:64985000-65005800	Weak transcription	Aorta	Aorta
20	chr16:64985000-65011000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr16:64985200-65004400	Weak transcription	Fetal Brain Male	brain
22	chr16:64985400-64987200	Weak transcription	Ovary	ovary
23	chr16:64985400-64994200	Weak transcription	Fetal Muscle Leg	muscle
24	chr16:64985400-65004200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:64985400-65004400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr16:64985400-65005800	Weak transcription	Spleen	Spleen
27	chr16:64985400-65015200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr16:64985600-64987400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr16:64985600-64987800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr16:64985800-64986400	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr16:64985800-64986400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr16:64985800-64986800	Enhancers	Adipose Nuclei	Adipose
33	chr16:64985800-64986800	Enhancers	Fetal Stomach	stomach
34	chr16:64985800-64986800	Enhancers	NH-A	brain
35	chr16:64985800-64987000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr16:64985800-64987400	Enhancers	HSMMtube	muscle
37	chr16:64985800-64987400	Enhancers	NHDF-Ad	bronchial
38	chr16:64986000-64986400	Enhancers	Stomach Smooth Muscle	stomach
39	chr16:64986000-64986400	Enhancers	HUVEC	blood vessel
40	chr16:64986000-64987000	Enhancers	HSMM	muscle
41	chr16:64986000-64987400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr16:64986000-64988400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr16:64986000-64991000	Weak transcription	Colon Smooth Muscle	Colon
44	chr16:64986000-64991000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr16:64986200-64986600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr16:64986200-64986800	Weak transcription	NHLF	lung
47	chr16:64986200-64987200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr16:64986200-64987800	Enhancers	Osteobl	bone
49	chr16:64986200-65003000	Weak transcription	Brain Hippocampus Middle	brain
50	chr16:64986200-65004200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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