Variant report

Variant	rs35213
Chromosome Location	chr16:65016087-65016088
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs11642165	1.00[ASN][1000 genomes]
rs11863441	1.00[ASN][1000 genomes]
rs12708870	1.00[ASN][1000 genomes]
rs1423995	1.00[ASN][1000 genomes]
rs1560192	1.00[ASN][1000 genomes]
rs1864148	1.00[ASN][1000 genomes]
rs257338	1.00[ASN][1000 genomes]
rs257340	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257488	1.00[ASN][1000 genomes]
rs257491	1.00[ASN][1000 genomes]
rs257500	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35141	0.82[YRI][hapmap]
rs35143	0.81[LWK][hapmap];0.82[YRI][hapmap]
rs35147	1.00[ASN][1000 genomes]
rs35168	1.00[ASN][1000 genomes]
rs35194	1.00[ASN][1000 genomes]
rs35196	1.00[ASN][1000 genomes]
rs35201	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35202	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35211	1.00[ASN][1000 genomes]
rs35212	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35217	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35220	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35221	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35222	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35223	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35225	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35227	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35228	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35229	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35230	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35231	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35232	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs369139	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs399975	1.00[ASN][1000 genomes]
rs40117	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40327	0.81[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs466915	1.00[ASN][1000 genomes]
rs4967866	0.82[YRI][hapmap]
rs6416687	1.00[ASN][1000 genomes]
rs6498969	1.00[ASN][1000 genomes]
rs6498970	1.00[ASN][1000 genomes]
rs6498971	1.00[ASN][1000 genomes]
rs7185314	1.00[ASN][1000 genomes]
rs7189027	1.00[ASN][1000 genomes]
rs7498207	1.00[ASN][1000 genomes]
rs7498373	1.00[ASN][1000 genomes]
rs7499444	1.00[ASN][1000 genomes]
rs7500503	1.00[ASN][1000 genomes]
rs8051995	1.00[ASN][1000 genomes]
rs8052187	1.00[ASN][1000 genomes]
rs8059900	1.00[ASN][1000 genomes]
rs891097	1.00[ASN][1000 genomes]
rs973200	0.82[YRI][hapmap]
rs9746754	1.00[ASN][1000 genomes]
rs988878	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9921084	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64991400-65032600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr16:64998000-65024800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr16:64999200-65017800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr16:64999200-65017800	Strong transcription	NH-A	brain
5	chr16:65000800-65051000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr16:65003400-65034000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr16:65004200-65017400	Strong transcription	Osteobl	bone
8	chr16:65004800-65027600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr16:65005800-65017200	Weak transcription	Brain Cingulate Gyrus	brain
10	chr16:65006400-65017800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr16:65006600-65017400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr16:65006600-65020600	Weak transcription	Brain Germinal Matrix	brain
13	chr16:65006600-65021000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr16:65006600-65024800	Weak transcription	Spleen	Spleen
15	chr16:65006800-65017400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr16:65007000-65020200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr16:65007000-65020800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr16:65008600-65024000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr16:65009600-65017400	Weak transcription	Fetal Brain Male	brain
20	chr16:65011200-65016200	Strong transcription	HSMMtube	muscle
21	chr16:65012200-65017200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr16:65012200-65017400	Strong transcription	Fetal Stomach	stomach
23	chr16:65013400-65017200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr16:65013400-65018000	Strong transcription	Fetal Lung	lung
25	chr16:65013600-65016200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr16:65013600-65016800	Strong transcription	NHDF-Ad	bronchial
27	chr16:65013800-65016200	Strong transcription	Fetal Muscle Leg	muscle
28	chr16:65013800-65017600	Strong transcription	HSMM	muscle
29	chr16:65014200-65016200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr16:65014200-65016800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr16:65014200-65018000	Enhancers	Fetal Heart	heart
32	chr16:65014200-65040200	Weak transcription	Fetal Intestine Small	intestine
33	chr16:65014400-65016200	Weak transcription	Fetal Kidney	kidney
34	chr16:65014400-65020200	Weak transcription	NHLF	lung
35	chr16:65015000-65016200	Enhancers	Aorta	Aorta
36	chr16:65015000-65016600	Weak transcription	Fetal Brain Female	brain
37	chr16:65015000-65020600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr16:65015000-65035000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr16:65015200-65016200	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr16:65015400-65016200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr16:65015400-65016800	Strong transcription	Muscle Satellite Cultured Cells	--
42	chr16:65015600-65016200	Genic enhancers	Fetal Muscle Trunk	muscle
43	chr16:65015600-65016200	Genic enhancers	Ovary	ovary
44	chr16:65015600-65016600	Genic enhancers	Stomach Smooth Muscle	stomach
45	chr16:65015600-65016800	Strong transcription	HMEC	breast
46	chr16:65015800-65016200	Enhancers	Brain Anterior Caudate	brain
47	chr16:65015800-65018600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr16:65016000-65016200	Genic enhancers	Brain Hippocampus Middle	brain
49	chr16:65016000-65016200	Enhancers	Brain Substantia Nigra	brain
50	chr16:65016000-65016200	ZNF genes & repeats	Placenta	Placenta

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