Variant report

Variant	rs257491
Chromosome Location	chr16:65050724-65050725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11642165	1.00[ASN][1000 genomes]
rs11863441	1.00[ASN][1000 genomes]
rs12708870	0.92[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708871	0.93[CEU][hapmap]
rs12925656	0.92[CEU][hapmap]
rs1402017	0.93[CEU][hapmap]
rs1423995	1.00[ASN][1000 genomes]
rs1560192	1.00[ASN][1000 genomes]
rs1864148	1.00[ASN][1000 genomes]
rs1879261	0.92[CEU][hapmap]
rs257338	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257340	1.00[ASN][1000 genomes]
rs257488	0.92[CEU][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257500	1.00[ASN][1000 genomes]
rs35147	0.92[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35168	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35194	0.92[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35196	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35201	1.00[ASN][1000 genomes]
rs35202	1.00[ASN][1000 genomes]
rs35211	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35212	1.00[ASN][1000 genomes]
rs35213	1.00[ASN][1000 genomes]
rs35217	1.00[ASN][1000 genomes]
rs35221	1.00[ASN][1000 genomes]
rs35222	1.00[ASN][1000 genomes]
rs35223	1.00[ASN][1000 genomes]
rs35225	1.00[ASN][1000 genomes]
rs35228	1.00[ASN][1000 genomes]
rs35229	1.00[ASN][1000 genomes]
rs35230	1.00[ASN][1000 genomes]
rs35231	1.00[ASN][1000 genomes]
rs35232	1.00[ASN][1000 genomes]
rs369139	1.00[ASN][1000 genomes]
rs399975	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40114	0.93[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs40117	1.00[ASN][1000 genomes]
rs40327	1.00[ASN][1000 genomes]
rs466915	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416687	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416688	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6498969	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498970	0.92[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498971	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498972	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6498975	0.93[CEU][hapmap]
rs6498977	0.93[CEU][hapmap]
rs7185314	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7189027	1.00[ASN][1000 genomes]
rs7191190	0.89[AMR][1000 genomes]
rs7206144	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7404112	0.92[CEU][hapmap]
rs7404568	0.93[CEU][hapmap]
rs7498207	0.93[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498373	0.84[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7499444	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7500420	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7500476	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7500503	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8051995	0.92[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8052187	1.00[ASN][1000 genomes]
rs8054252	0.93[CEU][hapmap]
rs8059900	1.00[ASN][1000 genomes]
rs891097	1.00[ASN][1000 genomes]
rs9746754	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988878	1.00[ASN][1000 genomes]
rs9921084	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65000800-65051000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:65025800-65051400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:65036000-65051400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr16:65039000-65061200	Weak transcription	Aorta	Aorta
5	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
6	chr16:65039200-65068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:65039400-65050800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr16:65039600-65079800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr16:65039800-65057400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr16:65040600-65086000	Weak transcription	HMEC	breast
11	chr16:65041000-65059200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr16:65041200-65072400	Weak transcription	Fetal Kidney	kidney
13	chr16:65044600-65064000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr16:65044600-65069000	Weak transcription	Brain Germinal Matrix	brain
15	chr16:65046400-65075600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr16:65046600-65052000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr16:65046800-65051200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr16:65046800-65055000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr16:65047200-65050800	Weak transcription	HSMM	muscle
20	chr16:65047200-65051000	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr16:65047200-65058800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr16:65047200-65059000	Weak transcription	HSMMtube	muscle
23	chr16:65047200-65061200	Weak transcription	NHLF	lung
24	chr16:65047200-65078400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr16:65047400-65050800	Weak transcription	Fetal Lung	lung
26	chr16:65047400-65050800	Weak transcription	NHDF-Ad	bronchial
27	chr16:65047400-65052000	Weak transcription	Ovary	ovary
28	chr16:65047400-65058800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr16:65049400-65051200	Enhancers	Brain Hippocampus Middle	brain
30	chr16:65049400-65051400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr16:65049600-65050800	Enhancers	Brain Anterior Caudate	brain
32	chr16:65049600-65051200	Enhancers	Brain Cingulate Gyrus	brain
33	chr16:65049800-65051000	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr16:65049800-65051000	Enhancers	Stomach Smooth Muscle	stomach
35	chr16:65049800-65051200	Enhancers	Brain Substantia Nigra	brain
36	chr16:65049800-65052600	Strong transcription	Osteobl	bone
37	chr16:65049800-65054200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr16:65050000-65052600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr16:65050000-65052800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr16:65050000-65052800	Strong transcription	NH-A	brain
41	chr16:65050000-65056800	Weak transcription	Fetal Stomach	stomach
42	chr16:65050400-65052800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr16:65050400-65056800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr16:65050600-65051200	Strong transcription	Fetal Brain Male	brain
45	chr16:65050600-65051200	ZNF genes & repeats	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links