Variant report

Variant	rs466915
Chromosome Location	chr16:64967034-64967035
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11642165	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11863441	1.00[ASN][1000 genomes]
rs12708870	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1423995	1.00[ASN][1000 genomes]
rs1560192	1.00[ASN][1000 genomes]
rs1864148	1.00[ASN][1000 genomes]
rs257338	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257340	1.00[ASN][1000 genomes]
rs257488	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257491	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257500	1.00[ASN][1000 genomes]
rs35147	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35194	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35196	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35201	1.00[ASN][1000 genomes]
rs35202	1.00[ASN][1000 genomes]
rs35211	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35212	1.00[ASN][1000 genomes]
rs35213	1.00[ASN][1000 genomes]
rs35217	1.00[ASN][1000 genomes]
rs35221	1.00[ASN][1000 genomes]
rs35222	1.00[ASN][1000 genomes]
rs35223	1.00[ASN][1000 genomes]
rs35225	1.00[ASN][1000 genomes]
rs35228	1.00[ASN][1000 genomes]
rs35229	1.00[ASN][1000 genomes]
rs35230	1.00[ASN][1000 genomes]
rs35231	1.00[ASN][1000 genomes]
rs35232	1.00[ASN][1000 genomes]
rs369139	1.00[ASN][1000 genomes]
rs399975	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40114	0.95[EUR][1000 genomes]
rs40117	1.00[ASN][1000 genomes]
rs40327	1.00[ASN][1000 genomes]
rs6416687	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498969	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498970	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498971	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185314	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7189027	1.00[ASN][1000 genomes]
rs7498207	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498373	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7499444	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7500420	0.87[EUR][1000 genomes]
rs7500476	0.84[EUR][1000 genomes]
rs7500503	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8051995	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8052187	1.00[ASN][1000 genomes]
rs8059900	1.00[ASN][1000 genomes]
rs891097	1.00[ASN][1000 genomes]
rs9746754	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988878	1.00[ASN][1000 genomes]
rs9921084	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv572901	chr16:64964233-64990187	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64967000-64967200	Enhancers	Brain Angular Gyrus	brain
2	chr16:64967000-64967600	Enhancers	Fetal Lung	lung

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