Variant report

Variant	rs7500476
Chromosome Location	chr16:65068422-65068423
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10852420	0.85[AMR][1000 genomes]
rs12708870	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12708871	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs12925656	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes]
rs1402017	1.00[CEU][hapmap]
rs1879261	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[AMR][1000 genomes]
rs1915116	0.85[AMR][1000 genomes]
rs257338	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.82[MKK][hapmap];0.90[TSI][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs257488	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs257491	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35147	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs35168	0.84[EUR][1000 genomes]
rs35194	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35196	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35211	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs399975	0.82[EUR][1000 genomes]
rs40114	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs466915	0.84[EUR][1000 genomes]
rs6416687	0.87[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6416688	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6416689	0.87[CEU][hapmap]
rs6498969	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6498970	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6498971	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6498972	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6498975	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs6498977	1.00[CEU][hapmap]
rs7191190	0.98[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7206144	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7404112	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap]
rs7404568	1.00[CEU][hapmap];0.85[AMR][1000 genomes]
rs7498207	1.00[CEU][hapmap];0.91[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7498373	0.93[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7499071	0.87[CEU][hapmap];0.85[GIH][hapmap];0.89[MEX][hapmap]
rs7499444	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7500159	0.87[AMR][1000 genomes]
rs7500420	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7500503	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8051995	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8054252	1.00[CEU][hapmap];0.87[AMR][1000 genomes]
rs9746754	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9921084	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65039200-65068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr16:65039600-65079800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr16:65040600-65086000	Weak transcription	HMEC	breast
5	chr16:65041200-65072400	Weak transcription	Fetal Kidney	kidney
6	chr16:65044600-65069000	Weak transcription	Brain Germinal Matrix	brain
7	chr16:65046400-65075600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr16:65047200-65078400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr16:65051000-65071200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr16:65052200-65070800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr16:65052800-65068800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr16:65053000-65069000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr16:65056800-65072800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr16:65058600-65104400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr16:65058800-65069200	Weak transcription	Fetal Brain Female	brain
16	chr16:65059800-65078400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr16:65060600-65070800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr16:65062200-65069600	Weak transcription	Fetal Muscle Leg	muscle
19	chr16:65062400-65074800	Weak transcription	Aorta	Aorta
20	chr16:65062600-65068600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr16:65062600-65071200	Weak transcription	NHLF	lung
22	chr16:65062800-65068600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr16:65063800-65071400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr16:65063800-65071400	Weak transcription	Fetal Brain Male	brain
25	chr16:65064000-65069800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr16:65064800-65071400	Weak transcription	Placenta	Placenta
27	chr16:65065000-65069000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr16:65065000-65071200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr16:65065200-65069000	Weak transcription	Brain Angular Gyrus	brain
30	chr16:65065200-65070200	Weak transcription	Brain Substantia Nigra	brain
31	chr16:65065200-65071000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr16:65065400-65068600	Weak transcription	Brain Hippocampus Middle	brain
33	chr16:65065800-65074800	Weak transcription	NHDF-Ad	bronchial
34	chr16:65066200-65068800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr16:65066200-65074800	Weak transcription	HSMM	muscle
36	chr16:65066600-65069200	Strong transcription	HSMMtube	muscle
37	chr16:65066800-65069800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr16:65066800-65071200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr16:65066800-65076800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr16:65066800-65078400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr16:65067000-65068600	Weak transcription	Fetal Lung	lung
42	chr16:65067000-65071600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr16:65067200-65068600	Weak transcription	Fetal Stomach	stomach
44	chr16:65068000-65069400	Genic enhancers	Ovary	ovary
45	chr16:65068200-65068600	Weak transcription	Spleen	Spleen
46	chr16:65068200-65073000	Strong transcription	Osteobl	bone
47	chr16:65068400-65068600	Strong transcription	Brain Anterior Caudate	brain
48	chr16:65068400-65070200	Weak transcription	NH-A	brain

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