Variant report

Variant	rs6416689
Chromosome Location	chr16:65124380-65124381
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10852420	0.80[AMR][1000 genomes]
rs12708870	0.87[CEU][hapmap]
rs12708871	0.87[CEU][hapmap];0.82[AMR][1000 genomes]
rs12925656	0.87[CEU][hapmap];0.82[AMR][1000 genomes]
rs1402017	0.87[CEU][hapmap]
rs1879261	0.87[CEU][hapmap];0.82[AMR][1000 genomes]
rs1915116	0.80[AMR][1000 genomes]
rs257338	0.87[CEU][hapmap]
rs257488	0.86[CEU][hapmap]
rs35147	0.87[CEU][hapmap]
rs35194	0.87[CEU][hapmap]
rs35196	0.87[CEU][hapmap]
rs40114	0.87[CEU][hapmap]
rs6498970	0.87[CEU][hapmap]
rs6498975	0.87[CEU][hapmap]
rs6498977	0.87[CEU][hapmap]
rs7206144	0.87[CEU][hapmap]
rs7404112	0.87[CEU][hapmap]
rs7404568	0.87[CEU][hapmap];0.80[AMR][1000 genomes]
rs7498207	0.87[CEU][hapmap]
rs7498373	0.93[CEU][hapmap]
rs7499071	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7500159	0.82[AMR][1000 genomes]
rs7500476	0.87[CEU][hapmap]
rs7500503	0.87[CEU][hapmap]
rs8051995	0.87[CEU][hapmap]
rs8054252	0.87[CEU][hapmap];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65095800-65152000	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65106200-65147400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr16:65106400-65128400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr16:65106400-65147600	Weak transcription	Fetal Muscle Trunk	muscle
5	chr16:65106800-65132400	Weak transcription	HSMMtube	muscle
6	chr16:65106800-65151800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr16:65107000-65132400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr16:65107400-65132600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr16:65110000-65126200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr16:65112800-65127400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr16:65113200-65141600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr16:65113600-65128600	Weak transcription	Fetal Kidney	kidney
13	chr16:65113600-65136400	Weak transcription	Spleen	Spleen
14	chr16:65113600-65138800	Weak transcription	Fetal Muscle Leg	muscle
15	chr16:65113800-65140400	Weak transcription	Fetal Brain Male	brain
16	chr16:65115800-65147600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr16:65116400-65136800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr16:65117400-65131200	Weak transcription	Brain Anterior Caudate	brain
19	chr16:65117400-65141000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr16:65117600-65126400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr16:65118000-65132600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr16:65118400-65138400	Weak transcription	Fetal Stomach	stomach
23	chr16:65119200-65129000	Weak transcription	Ovary	ovary
24	chr16:65119400-65131000	Weak transcription	Placenta	Placenta
25	chr16:65119600-65124400	Strong transcription	Osteobl	bone
26	chr16:65120200-65128600	Weak transcription	NH-A	brain
27	chr16:65120800-65148600	Weak transcription	Aorta	Aorta
28	chr16:65121800-65124400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr16:65122000-65128600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr16:65122200-65126000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr16:65122200-65147400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr16:65124000-65124400	Strong transcription	HSMM	muscle
33	chr16:65124000-65124400	Enhancers	NHLF	lung
34	chr16:65124200-65124400	Enhancers	Brain Germinal Matrix	brain
35	chr16:65124200-65124400	Genic enhancers	Fetal Lung	lung
36	chr16:65124200-65125200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr16:65124200-65125200	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links