Variant report

Variant	rs35194
Chromosome Location	chr16:65025849-65025850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11642165	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11863441	1.00[ASN][1000 genomes]
rs12708870	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708871	1.00[CEU][hapmap]
rs12925656	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs1402017	1.00[CEU][hapmap]
rs1423995	1.00[ASN][1000 genomes]
rs1560192	1.00[ASN][1000 genomes]
rs1864148	1.00[ASN][1000 genomes]
rs1879261	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs257338	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257340	1.00[ASN][1000 genomes]
rs257488	1.00[CEU][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257491	0.92[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257500	1.00[ASN][1000 genomes]
rs35147	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35168	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35196	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35201	1.00[ASN][1000 genomes]
rs35202	1.00[ASN][1000 genomes]
rs35211	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35212	1.00[ASN][1000 genomes]
rs35213	1.00[ASN][1000 genomes]
rs35217	1.00[ASN][1000 genomes]
rs35221	1.00[ASN][1000 genomes]
rs35222	1.00[ASN][1000 genomes]
rs35223	1.00[ASN][1000 genomes]
rs35225	1.00[ASN][1000 genomes]
rs35228	1.00[ASN][1000 genomes]
rs35229	1.00[ASN][1000 genomes]
rs35230	1.00[ASN][1000 genomes]
rs35231	1.00[ASN][1000 genomes]
rs35232	1.00[ASN][1000 genomes]
rs369139	1.00[ASN][1000 genomes]
rs399975	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40114	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs40117	1.00[ASN][1000 genomes]
rs40327	1.00[ASN][1000 genomes]
rs466915	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416687	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416688	0.85[AMR][1000 genomes]
rs6416689	0.87[CEU][hapmap]
rs6498969	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498970	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498971	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498972	0.85[AMR][1000 genomes]
rs6498975	1.00[CEU][hapmap]
rs6498977	1.00[CEU][hapmap]
rs7185314	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7189027	1.00[ASN][1000 genomes]
rs7191190	0.85[AMR][1000 genomes]
rs7206144	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes]
rs7404112	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap]
rs7404568	1.00[CEU][hapmap]
rs7498207	1.00[CEU][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498373	0.93[CEU][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7499071	0.87[CEU][hapmap];0.85[GIH][hapmap];0.89[MEX][hapmap]
rs7499444	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7500420	0.91[EUR][1000 genomes]
rs7500476	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7500503	1.00[CEU][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8051995	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8052187	1.00[ASN][1000 genomes]
rs8054252	1.00[CEU][hapmap]
rs8059900	1.00[ASN][1000 genomes]
rs891097	1.00[ASN][1000 genomes]
rs9746754	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988878	1.00[ASN][1000 genomes]
rs9921084	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64991400-65032600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr16:65000800-65051000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr16:65003400-65034000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr16:65004800-65027600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr16:65014200-65040200	Weak transcription	Fetal Intestine Small	intestine
6	chr16:65015000-65035000	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr16:65016200-65032400	Weak transcription	Lung	lung
8	chr16:65016200-65040200	Weak transcription	Left Ventricle	heart
9	chr16:65017200-65041800	Weak transcription	Colon Smooth Muscle	Colon
10	chr16:65018000-65035600	Strong transcription	HSMM	muscle
11	chr16:65018400-65028400	Strong transcription	NH-A	brain
12	chr16:65018400-65028600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr16:65018800-65026000	Strong transcription	Fetal Muscle Trunk	muscle
14	chr16:65018800-65035600	Strong transcription	Osteobl	bone
15	chr16:65019000-65028000	Strong transcription	NHDF-Ad	bronchial
16	chr16:65019400-65026800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr16:65019600-65027800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr16:65020200-65028800	Strong transcription	NHLF	lung
19	chr16:65020400-65026000	Strong transcription	Fetal Stomach	stomach
20	chr16:65020400-65026800	Strong transcription	Stomach Smooth Muscle	stomach
21	chr16:65020400-65027000	Strong transcription	Fetal Brain Female	brain
22	chr16:65021000-65034200	Weak transcription	Adipose Nuclei	Adipose
23	chr16:65021200-65026000	Strong transcription	Aorta	Aorta
24	chr16:65021200-65038200	Weak transcription	Brain Germinal Matrix	brain
25	chr16:65021800-65026200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr16:65021800-65027000	Strong transcription	Fetal Brain Male	brain
27	chr16:65022000-65041200	Weak transcription	Fetal Heart	heart
28	chr16:65022200-65037200	Weak transcription	Fetal Intestine Large	intestine
29	chr16:65022400-65027800	Strong transcription	Fetal Muscle Leg	muscle
30	chr16:65023000-65026000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr16:65023200-65026200	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr16:65023400-65043200	Strong transcription	Fetal Lung	lung
33	chr16:65023600-65030000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr16:65023600-65039600	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr16:65024000-65026200	Strong transcription	Placenta	Placenta
36	chr16:65024200-65026800	Strong transcription	Fetal Kidney	kidney
37	chr16:65024400-65035000	Weak transcription	Brain Substantia Nigra	brain
38	chr16:65024600-65026800	Strong transcription	Duodenum Smooth Muscle	Duodenum
39	chr16:65024600-65031800	Weak transcription	Brain Hippocampus Middle	brain
40	chr16:65024800-65028400	Strong transcription	HMEC	breast
41	chr16:65025000-65026000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr16:65025000-65026200	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr16:65025000-65026600	Strong transcription	Brain Cingulate Gyrus	brain
44	chr16:65025000-65026800	Strong transcription	Brain Inferior Temporal Lobe	brain
45	chr16:65025000-65026800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr16:65025000-65027000	Strong transcription	Brain Anterior Caudate	brain
47	chr16:65025200-65026000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr16:65025200-65026600	Weak transcription	Right Ventricle	heart
49	chr16:65025200-65030800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr16:65025200-65037200	Weak transcription	Spleen	Spleen

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