Variant report

Variant	rs7499444
Chromosome Location	chr16:65075691-65075692
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10852420	0.81[AMR][1000 genomes]
rs11642165	1.00[ASN][1000 genomes]
rs11863441	1.00[ASN][1000 genomes]
rs12708870	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708871	0.83[AMR][1000 genomes]
rs12925656	0.83[AMR][1000 genomes]
rs1423995	1.00[ASN][1000 genomes]
rs1560192	1.00[ASN][1000 genomes]
rs1864148	1.00[ASN][1000 genomes]
rs1879261	0.83[AMR][1000 genomes]
rs1915116	0.81[AMR][1000 genomes]
rs257338	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257340	1.00[ASN][1000 genomes]
rs257488	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257491	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257500	1.00[ASN][1000 genomes]
rs35147	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35168	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35194	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35196	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35201	1.00[ASN][1000 genomes]
rs35202	1.00[ASN][1000 genomes]
rs35211	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35212	1.00[ASN][1000 genomes]
rs35213	1.00[ASN][1000 genomes]
rs35217	1.00[ASN][1000 genomes]
rs35221	1.00[ASN][1000 genomes]
rs35222	1.00[ASN][1000 genomes]
rs35223	1.00[ASN][1000 genomes]
rs35225	1.00[ASN][1000 genomes]
rs35228	1.00[ASN][1000 genomes]
rs35229	1.00[ASN][1000 genomes]
rs35230	1.00[ASN][1000 genomes]
rs35231	1.00[ASN][1000 genomes]
rs35232	1.00[ASN][1000 genomes]
rs369139	1.00[ASN][1000 genomes]
rs399975	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40114	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs40117	1.00[ASN][1000 genomes]
rs40327	1.00[ASN][1000 genomes]
rs466915	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416687	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416688	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6498969	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498970	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498971	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498972	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7185314	1.00[ASN][1000 genomes]
rs7189027	1.00[ASN][1000 genomes]
rs7191190	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7206144	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7404568	0.81[AMR][1000 genomes]
rs7498207	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498373	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7500159	0.83[AMR][1000 genomes]
rs7500420	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7500476	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7500503	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8051995	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8052187	1.00[ASN][1000 genomes]
rs8054252	0.83[AMR][1000 genomes]
rs8059900	1.00[ASN][1000 genomes]
rs891097	1.00[ASN][1000 genomes]
rs9746754	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988878	1.00[ASN][1000 genomes]
rs9921084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1831	chr16:65071976-65106105	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65039600-65079800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr16:65040600-65086000	Weak transcription	HMEC	breast
4	chr16:65047200-65078400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr16:65058600-65104400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr16:65059800-65078400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr16:65066800-65076800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr16:65066800-65078400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr16:65069800-65105000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr16:65071800-65077400	Weak transcription	NHLF	lung
11	chr16:65072600-65075800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr16:65072600-65076200	Weak transcription	Brain Angular Gyrus	brain
13	chr16:65072600-65077800	Weak transcription	Brain Germinal Matrix	brain
14	chr16:65072800-65076000	Weak transcription	Brain Hippocampus Middle	brain
15	chr16:65072800-65076400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr16:65072800-65076600	Weak transcription	Brain Substantia Nigra	brain
17	chr16:65072800-65077200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr16:65072800-65078000	Weak transcription	Fetal Brain Female	brain
19	chr16:65072800-65078400	Weak transcription	Fetal Brain Male	brain
20	chr16:65072800-65088800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr16:65072800-65096200	Weak transcription	Colon Smooth Muscle	Colon
22	chr16:65073000-65076200	Weak transcription	Spleen	Spleen
23	chr16:65073000-65076400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr16:65073000-65078600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr16:65074400-65077600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr16:65074400-65084800	Strong transcription	Fetal Lung	lung
27	chr16:65074400-65094000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr16:65074600-65076600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr16:65074600-65076800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr16:65074600-65077800	Strong transcription	Osteobl	bone
31	chr16:65074800-65075800	Enhancers	Aorta	Aorta
32	chr16:65074800-65077200	Strong transcription	NHDF-Ad	bronchial
33	chr16:65074800-65077800	Strong transcription	NH-A	brain
34	chr16:65074800-65078200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr16:65075000-65076000	Strong transcription	Brain Anterior Caudate	brain
36	chr16:65075000-65076400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr16:65075000-65076400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr16:65075000-65076400	Genic enhancers	Ovary	ovary
39	chr16:65075000-65077000	Strong transcription	Fetal Stomach	stomach
40	chr16:65075000-65082200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr16:65075200-65076200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr16:65075200-65076200	Strong transcription	Fetal Muscle Leg	muscle
43	chr16:65075200-65077400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr16:65075200-65077400	Strong transcription	Stomach Smooth Muscle	stomach
45	chr16:65075200-65077600	Strong transcription	HSMM	muscle
46	chr16:65075200-65077800	Strong transcription	HSMMtube	muscle
47	chr16:65075200-65078000	Weak transcription	Fetal Kidney	kidney
48	chr16:65075600-65080400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links