Variant report

Variant	rs7500159
Chromosome Location	chr16:65113403-65113404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10852420	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12708871	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12925656	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1402017	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1879261	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1915116	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs257338	0.85[AMR][1000 genomes]
rs6416687	0.89[AMR][1000 genomes]
rs6416688	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6416689	0.82[AMR][1000 genomes]
rs6498969	0.85[AMR][1000 genomes]
rs6498970	0.83[AMR][1000 genomes]
rs6498971	0.83[AMR][1000 genomes]
rs6498972	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6498975	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6498977	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7191190	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7206144	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7404112	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7404568	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7498207	0.85[AMR][1000 genomes]
rs7499071	0.82[AMR][1000 genomes]
rs7499444	0.83[AMR][1000 genomes]
rs7500476	0.87[AMR][1000 genomes]
rs7500503	0.87[AMR][1000 genomes]
rs8054252	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9746754	0.83[AMR][1000 genomes]
rs9921084	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65095800-65152000	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65104600-65116200	Weak transcription	Fetal Intestine Small	intestine
3	chr16:65105400-65117200	Weak transcription	HMEC	breast
4	chr16:65106200-65114200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr16:65106200-65115800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr16:65106200-65147400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr16:65106400-65115800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr16:65106400-65116800	Weak transcription	Brain Hippocampus Middle	brain
9	chr16:65106400-65120000	Weak transcription	Brain Germinal Matrix	brain
10	chr16:65106400-65120400	Weak transcription	Aorta	Aorta
11	chr16:65106400-65128400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr16:65106400-65147600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr16:65106800-65115800	Weak transcription	HSMM	muscle
14	chr16:65106800-65132400	Weak transcription	HSMMtube	muscle
15	chr16:65106800-65151800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr16:65107000-65115800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr16:65107000-65117000	Weak transcription	NHDF-Ad	bronchial
18	chr16:65107000-65124000	Weak transcription	NHLF	lung
19	chr16:65107000-65132400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr16:65107400-65132600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr16:65108200-65117000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr16:65108800-65113600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr16:65109400-65117000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr16:65110000-65115800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr16:65110000-65116800	Weak transcription	Fetal Brain Female	brain
26	chr16:65110000-65126200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr16:65110200-65115800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr16:65111600-65114000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr16:65112000-65113600	Enhancers	Brain Angular Gyrus	brain
30	chr16:65112200-65113800	Enhancers	Fetal Brain Male	brain
31	chr16:65112200-65115800	Weak transcription	Osteobl	bone
32	chr16:65112600-65113600	Enhancers	Ovary	ovary
33	chr16:65112600-65113800	Enhancers	Fetal Lung	lung
34	chr16:65112600-65113800	Enhancers	Fetal Stomach	stomach
35	chr16:65112600-65116600	Weak transcription	Brain Substantia Nigra	brain
36	chr16:65112800-65113600	Enhancers	H9 Cell Line	embryonic stem cell
37	chr16:65112800-65113600	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr16:65112800-65113600	Enhancers	Spleen	Spleen
39	chr16:65112800-65117200	Weak transcription	Brain Anterior Caudate	brain
40	chr16:65112800-65127400	Weak transcription	Brain Cingulate Gyrus	brain
41	chr16:65113000-65113600	Enhancers	H1 Cell Line	embryonic stem cell
42	chr16:65113000-65113600	Enhancers	Fetal Muscle Leg	muscle
43	chr16:65113200-65141600	Weak transcription	Stomach Smooth Muscle	stomach
44	chr16:65113400-65113600	Enhancers	Fetal Kidney	kidney
45	chr16:65113400-65113600	Enhancers	Lung	lung
46	chr16:65113400-65113600	Strong transcription	NH-A	brain

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