Variant report

Variant	rs10852420
Chromosome Location	chr16:65129816-65129817
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12708871	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12925656	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1402017	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1879261	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1915116	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs257338	0.83[AMR][1000 genomes]
rs6416687	0.87[AMR][1000 genomes]
rs6416688	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6416689	0.80[AMR][1000 genomes]
rs6498969	0.83[AMR][1000 genomes]
rs6498970	0.81[AMR][1000 genomes]
rs6498971	0.81[AMR][1000 genomes]
rs6498972	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6498975	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6498977	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7191190	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7206144	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7404112	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7404568	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7498207	0.83[AMR][1000 genomes]
rs7499071	0.80[AMR][1000 genomes]
rs7499444	0.81[AMR][1000 genomes]
rs7500159	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7500476	0.85[AMR][1000 genomes]
rs7500503	0.85[AMR][1000 genomes]
rs8054252	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9746754	0.81[AMR][1000 genomes]
rs9921084	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65095800-65152000	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65106200-65147400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr16:65106400-65147600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr16:65106800-65132400	Weak transcription	HSMMtube	muscle
5	chr16:65106800-65151800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr16:65107000-65132400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr16:65107400-65132600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr16:65113200-65141600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr16:65113600-65136400	Weak transcription	Spleen	Spleen
10	chr16:65113600-65138800	Weak transcription	Fetal Muscle Leg	muscle
11	chr16:65113800-65140400	Weak transcription	Fetal Brain Male	brain
12	chr16:65115800-65147600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr16:65116400-65136800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr16:65117400-65131200	Weak transcription	Brain Anterior Caudate	brain
15	chr16:65117400-65141000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr16:65118000-65132600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr16:65118400-65138400	Weak transcription	Fetal Stomach	stomach
18	chr16:65119400-65131000	Weak transcription	Placenta	Placenta
19	chr16:65120800-65148600	Weak transcription	Aorta	Aorta
20	chr16:65122200-65147400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr16:65124400-65130400	Strong transcription	Fetal Lung	lung
22	chr16:65124400-65130800	Weak transcription	HSMM	muscle
23	chr16:65124400-65139200	Weak transcription	NHLF	lung
24	chr16:65125200-65133200	Weak transcription	NHDF-Ad	bronchial
25	chr16:65125800-65132200	Strong transcription	Osteobl	bone
26	chr16:65125800-65132600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr16:65126600-65140800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr16:65128600-65130200	Strong transcription	NH-A	brain
29	chr16:65128800-65130600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr16:65129200-65133400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr16:65129200-65133600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr16:65129200-65148400	Weak transcription	Fetal Kidney	kidney
33	chr16:65129600-65131200	Weak transcription	Ovary	ovary
34	chr16:65129600-65133200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr16:65129800-65130200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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