Variant report
| Variant | rs11863441 |
|---|---|
| Chromosome Location | chr16:64905990-64905991 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:51)
| rs_ID | r2[population] |
|---|---|
| rs11642165 | 1.00[ASN][1000 genomes] |
| rs12708870 | 1.00[ASN][1000 genomes] |
| rs1423995 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1560192 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1864148 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs257338 | 1.00[ASN][1000 genomes] |
| rs257340 | 1.00[ASN][1000 genomes] |
| rs257488 | 1.00[ASN][1000 genomes] |
| rs257491 | 1.00[ASN][1000 genomes] |
| rs257500 | 1.00[ASN][1000 genomes] |
| rs35147 | 1.00[ASN][1000 genomes] |
| rs35168 | 1.00[ASN][1000 genomes] |
| rs35194 | 1.00[ASN][1000 genomes] |
| rs35196 | 1.00[ASN][1000 genomes] |
| rs35201 | 1.00[ASN][1000 genomes] |
| rs35202 | 1.00[ASN][1000 genomes] |
| rs35211 | 1.00[ASN][1000 genomes] |
| rs35212 | 1.00[ASN][1000 genomes] |
| rs35213 | 1.00[ASN][1000 genomes] |
| rs35217 | 1.00[ASN][1000 genomes] |
| rs35221 | 1.00[ASN][1000 genomes] |
| rs35222 | 1.00[ASN][1000 genomes] |
| rs35223 | 1.00[ASN][1000 genomes] |
| rs35225 | 1.00[ASN][1000 genomes] |
| rs35228 | 1.00[ASN][1000 genomes] |
| rs35229 | 1.00[ASN][1000 genomes] |
| rs35230 | 1.00[ASN][1000 genomes] |
| rs35231 | 1.00[ASN][1000 genomes] |
| rs35232 | 1.00[ASN][1000 genomes] |
| rs369139 | 1.00[ASN][1000 genomes] |
| rs399975 | 1.00[ASN][1000 genomes] |
| rs40117 | 1.00[ASN][1000 genomes] |
| rs40327 | 1.00[ASN][1000 genomes] |
| rs466915 | 1.00[ASN][1000 genomes] |
| rs6416687 | 1.00[ASN][1000 genomes] |
| rs6498969 | 1.00[ASN][1000 genomes] |
| rs6498970 | 1.00[ASN][1000 genomes] |
| rs6498971 | 1.00[ASN][1000 genomes] |
| rs7185314 | 1.00[ASN][1000 genomes] |
| rs7189027 | 1.00[ASN][1000 genomes] |
| rs7498207 | 1.00[ASN][1000 genomes] |
| rs7498373 | 1.00[ASN][1000 genomes] |
| rs7499444 | 1.00[ASN][1000 genomes] |
| rs7500503 | 1.00[ASN][1000 genomes] |
| rs8051995 | 1.00[ASN][1000 genomes] |
| rs8052187 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8059900 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs891097 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9746754 | 1.00[ASN][1000 genomes] |
| rs988878 | 1.00[ASN][1000 genomes] |
| rs9921084 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948640 | chr16:64859061-65112790 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv457512 | chr16:64887354-64935433 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv572900 | chr16:64887354-64935433 | Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:64900800-64934400 | Weak transcription | Fetal Brain Male | brain |
| 2 | chr16:64905200-64906400 | Weak transcription | HSMMtube | muscle |
| 3 | chr16:64905200-64912800 | Weak transcription | Fetal Muscle Leg | muscle |
