Variant report

Variant	rs35147
Chromosome Location	chr16:64980818-64980819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11642165	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11863441	1.00[ASN][1000 genomes]
rs12708870	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12708871	1.00[CEU][hapmap]
rs12925656	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs1402017	1.00[CEU][hapmap]
rs1423995	1.00[ASN][1000 genomes]
rs1560192	1.00[ASN][1000 genomes]
rs1864148	1.00[ASN][1000 genomes]
rs1879261	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs257338	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.90[TSI][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257340	1.00[ASN][1000 genomes]
rs257488	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257491	0.92[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs257500	1.00[ASN][1000 genomes]
rs35168	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35194	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35196	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35201	1.00[ASN][1000 genomes]
rs35202	1.00[ASN][1000 genomes]
rs35211	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35212	1.00[ASN][1000 genomes]
rs35213	1.00[ASN][1000 genomes]
rs35217	1.00[ASN][1000 genomes]
rs35221	1.00[ASN][1000 genomes]
rs35222	1.00[ASN][1000 genomes]
rs35223	1.00[ASN][1000 genomes]
rs35225	1.00[ASN][1000 genomes]
rs35228	1.00[ASN][1000 genomes]
rs35229	1.00[ASN][1000 genomes]
rs35230	1.00[ASN][1000 genomes]
rs35231	1.00[ASN][1000 genomes]
rs35232	1.00[ASN][1000 genomes]
rs369139	1.00[ASN][1000 genomes]
rs399975	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40114	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs40117	1.00[ASN][1000 genomes]
rs40327	1.00[ASN][1000 genomes]
rs466915	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416687	0.87[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416689	0.87[CEU][hapmap]
rs6498969	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498970	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498971	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498975	1.00[CEU][hapmap]
rs6498977	1.00[CEU][hapmap]
rs7185314	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7189027	1.00[ASN][1000 genomes]
rs7206144	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs7404112	1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap]
rs7404568	1.00[CEU][hapmap]
rs7498207	1.00[CEU][hapmap];0.82[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7498373	0.93[CEU][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7499071	0.87[CEU][hapmap];0.85[GIH][hapmap];0.89[MEX][hapmap]
rs7499444	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7500420	0.87[EUR][1000 genomes]
rs7500476	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs7500503	1.00[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8051995	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8052187	1.00[ASN][1000 genomes]
rs8054252	1.00[CEU][hapmap]
rs8059900	1.00[ASN][1000 genomes]
rs891097	1.00[ASN][1000 genomes]
rs9746754	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs988878	1.00[ASN][1000 genomes]
rs9921084	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases
3	nsv572901	chr16:64964233-64990187	Genic enhancers Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64967800-64981600	Weak transcription	Fetal Stomach	stomach
2	chr16:64976400-64981000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr16:64977400-64981400	Weak transcription	Fetal Muscle Leg	muscle
4	chr16:64977800-64981600	Weak transcription	HUVEC	blood vessel
5	chr16:64978000-64981600	Weak transcription	Ovary	ovary
6	chr16:64978200-64981200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr16:64978400-64981400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr16:64978400-64981400	Weak transcription	Fetal Muscle Trunk	muscle
9	chr16:64978400-64981800	Weak transcription	Gastric	stomach
10	chr16:64978400-64983600	Weak transcription	Fetal Brain Male	brain
11	chr16:64978600-64983600	Weak transcription	Fetal Kidney	kidney
12	chr16:64978800-64983800	Weak transcription	Brain Hippocampus Middle	brain
13	chr16:64978800-64985800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr16:64979000-64981200	Weak transcription	Fetal Lung	lung
15	chr16:64979000-64985800	Strong transcription	HSMM	muscle
16	chr16:64979000-64998000	Weak transcription	HMEC	breast
17	chr16:64979400-64981000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr16:64979400-64981400	Weak transcription	Brain Anterior Caudate	brain
19	chr16:64979400-64983600	Weak transcription	Brain Angular Gyrus	brain
20	chr16:64979400-64984000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr16:64979400-64985400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr16:64979600-64981400	Weak transcription	HSMMtube	muscle
23	chr16:64979600-64985600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr16:64979600-64985600	Strong transcription	Osteobl	bone
25	chr16:64979800-64981400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr16:64980000-64981600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr16:64980000-64981600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr16:64980000-64981600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr16:64980000-64981600	Weak transcription	Aorta	Aorta
30	chr16:64980000-64981600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr16:64980000-64981600	Weak transcription	Fetal Brain Female	brain
32	chr16:64980000-64981600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr16:64980000-64982800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr16:64980000-64983800	Weak transcription	Fetal Intestine Large	intestine
35	chr16:64980000-65005200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr16:64980200-64983000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr16:64980200-64984400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr16:64980200-64984800	Strong transcription	NH-A	brain
39	chr16:64980200-64985000	Strong transcription	Brain Germinal Matrix	brain
40	chr16:64980400-64982800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr16:64980400-64984600	Weak transcription	Lung	lung
42	chr16:64980600-64985200	Strong transcription	NHDF-Ad	bronchial
43	chr16:64980800-64985000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr16:64980800-64985400	Strong transcription	NHLF	lung
45	chr16:64980800-64991200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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