Variant report

Variant	rs2860056
Chromosome Location	chr16:65047491-65047492
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1025312	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10459793	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11640810	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11647164	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12708869	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12923000	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12923516	0.82[EUR][1000 genomes]
rs1520233	0.80[EUR][1000 genomes]
rs1607696	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1826821	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs185393	0.93[ASN][1000 genomes]
rs2331446	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35153	0.80[ASN][1000 genomes]
rs35181	0.95[ASN][1000 genomes]
rs35183	0.93[ASN][1000 genomes]
rs35184	0.93[ASN][1000 genomes]
rs35186	0.93[ASN][1000 genomes]
rs35187	0.93[ASN][1000 genomes]
rs35190	0.93[ASN][1000 genomes]
rs35197	0.93[ASN][1000 genomes]
rs3760056	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3826240	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4967879	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4967881	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7195682	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs765771	0.80[EUR][1000 genomes]
rs973199	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9930786	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65000800-65051000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr16:65025800-65051400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr16:65036000-65051400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr16:65039000-65061200	Weak transcription	Aorta	Aorta
5	chr16:65039000-65089600	Weak transcription	Fetal Intestine Large	intestine
6	chr16:65039200-65068800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr16:65039400-65050800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr16:65039600-65049000	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr16:65039600-65079800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr16:65039800-65057400	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr16:65040000-65049800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr16:65040400-65049800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr16:65040600-65086000	Weak transcription	HMEC	breast
14	chr16:65041000-65059200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr16:65041200-65072400	Weak transcription	Fetal Kidney	kidney
16	chr16:65044200-65050600	Weak transcription	Fetal Muscle Leg	muscle
17	chr16:65044600-65049000	Weak transcription	Fetal Brain Female	brain
18	chr16:65044600-65064000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr16:65044600-65069000	Weak transcription	Brain Germinal Matrix	brain
20	chr16:65044800-65049600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr16:65045400-65050600	Weak transcription	Fetal Brain Male	brain
22	chr16:65046200-65049800	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr16:65046400-65075600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr16:65046600-65049400	Weak transcription	Brain Hippocampus Middle	brain
25	chr16:65046600-65049600	Weak transcription	Brain Anterior Caudate	brain
26	chr16:65046600-65052000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr16:65046800-65051200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr16:65046800-65055000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr16:65047000-65047600	Strong transcription	Fetal Stomach	stomach
30	chr16:65047000-65049400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr16:65047200-65049800	Weak transcription	Brain Substantia Nigra	brain
32	chr16:65047200-65050800	Weak transcription	HSMM	muscle
33	chr16:65047200-65051000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr16:65047200-65058800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr16:65047200-65059000	Weak transcription	HSMMtube	muscle
36	chr16:65047200-65061200	Weak transcription	NHLF	lung
37	chr16:65047200-65078400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr16:65047400-65047800	Weak transcription	Osteobl	bone
39	chr16:65047400-65049000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr16:65047400-65049400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr16:65047400-65049400	Weak transcription	NH-A	brain
42	chr16:65047400-65050800	Weak transcription	Fetal Lung	lung
43	chr16:65047400-65050800	Weak transcription	NHDF-Ad	bronchial
44	chr16:65047400-65052000	Weak transcription	Ovary	ovary
45	chr16:65047400-65058800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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