Variant report

Variant	rs12923516
Chromosome Location	chr16:64942065-64942066
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:64924355..64925885-chr16:64941541..64944265,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1025312	0.88[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs10459793	0.88[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs11640810	0.88[CEU][hapmap];0.85[JPT][hapmap]
rs11646481	0.91[ASN][1000 genomes]
rs11647164	0.88[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11866839	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12708869	0.88[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes]
rs12922230	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12923000	0.82[EUR][1000 genomes]
rs12927264	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12931546	0.82[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs1540412	0.95[ASN][1000 genomes]
rs1607696	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16968039	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1826821	0.82[EUR][1000 genomes]
rs185393	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1864147	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2280394	0.88[CEU][hapmap];0.86[JPT][hapmap]
rs2331446	0.88[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2860056	0.82[EUR][1000 genomes]
rs35141	0.91[JPT][hapmap]
rs35143	0.91[JPT][hapmap]
rs35153	0.89[ASN][1000 genomes]
rs35181	0.85[CHB][hapmap];0.86[JPT][hapmap]
rs35184	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs35186	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs35197	0.90[JPT][hapmap]
rs3760056	0.88[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs3826240	0.84[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4967877	0.84[ASN][1000 genomes]
rs4967879	0.88[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.88[EUR][1000 genomes]
rs4967881	0.81[EUR][1000 genomes]
rs973199	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9930786	0.88[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64931200-64943800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr16:64935000-64943800	Weak transcription	Fetal Lung	lung
3	chr16:64941200-64943000	Enhancers	Ovary	ovary
4	chr16:64941400-64942400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr16:64941600-64942200	Enhancers	Fetal Heart	heart
6	chr16:64941600-64942600	Enhancers	Left Ventricle	heart
7	chr16:64941800-64942200	Enhancers	Osteobl	bone
8	chr16:64941800-64942800	Enhancers	Fetal Stomach	stomach
9	chr16:64941800-64944000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr16:64942000-64942200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr16:64942000-64942200	Enhancers	Fetal Muscle Trunk	muscle
12	chr16:64942000-64942200	Enhancers	NH-A	brain

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