Variant report

Variant	rs16968039
Chromosome Location	chr16:64940843-64940844
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1025312	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10459793	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[EUR][1000 genomes]
rs11640810	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11646481	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11647164	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11866839	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12708869	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs12922230	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12923516	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12927264	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12931546	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1540412	0.91[ASN][1000 genomes]
rs1607696	0.85[ASN][1000 genomes]
rs1845849	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs185393	0.86[CHB][hapmap]
rs1864147	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2280394	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2331446	1.00[CEU][hapmap];0.85[CHB][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35153	0.84[ASN][1000 genomes]
rs35181	0.85[CHB][hapmap]
rs35184	0.85[CHB][hapmap]
rs35186	0.85[CHB][hapmap]
rs3760056	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3826240	0.84[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3891307	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4967877	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4967879	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs973199	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9930786	1.00[CEU][hapmap];0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64927800-64941800	Weak transcription	Osteobl	bone
2	chr16:64931200-64943800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr16:64935000-64943800	Weak transcription	Fetal Lung	lung
4	chr16:64938600-64941800	Weak transcription	Aorta	Aorta

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