Variant report

Variant	rs12922230
Chromosome Location	chr16:64949222-64949223
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1025312	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs10459793	0.87[CEU][hapmap];0.84[CHB][hapmap]
rs11640810	0.88[CEU][hapmap];0.87[EUR][1000 genomes]
rs11646481	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11647164	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs11866839	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12708869	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs12923516	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12927264	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12931546	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1540412	0.92[ASN][1000 genomes]
rs1607696	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16968039	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1845849	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs185393	0.86[CHB][hapmap]
rs1864147	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2280394	0.88[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2331446	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs35153	0.85[ASN][1000 genomes]
rs35181	0.85[CHB][hapmap]
rs35184	0.85[CHB][hapmap]
rs35186	0.85[CHB][hapmap]
rs3760056	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs3826240	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs3891307	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4967877	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4967879	0.88[CEU][hapmap];0.85[CHB][hapmap]
rs9930786	0.88[CEU][hapmap];0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948640	chr16:64859061-65112790	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv984501	chr16:64919797-64993897	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64945000-64949600	Weak transcription	Fetal Lung	lung
2	chr16:64945000-64954400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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