Variant report

Variant	rs7208773
Chromosome Location	chr17:67343873-67343874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs60997207	1.00[AMR][1000 genomes]
rs61673269	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7207318	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7212671	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7216499	1.00[EUR][1000 genomes]
rs7220968	1.00[EUR][1000 genomes]
rs7224786	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72559406	1.00[EUR][1000 genomes]
rs73998235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73998239	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73998241	1.00[AMR][1000 genomes]
rs8065592	1.00[EUR][1000 genomes]
rs8076805	1.00[EUR][1000 genomes]
rs9900211	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833527	chr17:67240575-67400871	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv3517126	chr17:67343157-67349955	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3517131	chr17:67343607-67349805	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv2546518	chr17:67343775-67349517	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67339400-67355200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr17:67343400-67344800	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr17:67343400-67346200	Weak transcription	Skeletal Muscle Male	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links