Variant report
| Variant | rs73998239 |
|---|---|
| Chromosome Location | chr17:67351959-67351960 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs28678617 | 1.00[EUR][1000 genomes] |
| rs55987469 | 1.00[EUR][1000 genomes] |
| rs59236807 | 1.00[EUR][1000 genomes] |
| rs60034644 | 1.00[EUR][1000 genomes] |
| rs60545999 | 1.00[EUR][1000 genomes] |
| rs60997207 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61673269 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6501325 | 1.00[EUR][1000 genomes] |
| rs7207318 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7208773 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7212671 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7217016 | 1.00[EUR][1000 genomes] |
| rs7223220 | 1.00[EUR][1000 genomes] |
| rs7224786 | 0.82[AFR][1000 genomes] |
| rs7226269 | 1.00[EUR][1000 genomes] |
| rs73363579 | 1.00[EUR][1000 genomes] |
| rs73363593 | 1.00[EUR][1000 genomes] |
| rs73363596 | 1.00[EUR][1000 genomes] |
| rs73363598 | 1.00[EUR][1000 genomes] |
| rs73998235 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73998240 | 1.00[EUR][1000 genomes] |
| rs73998241 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73998244 | 1.00[EUR][1000 genomes] |
| rs73998255 | 1.00[EUR][1000 genomes] |
| rs73998270 | 1.00[EUR][1000 genomes] |
| rs73998272 | 1.00[EUR][1000 genomes] |
| rs8076188 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv833527 | chr17:67240575-67400871 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| 2 | nsv522420 | chr17:67345358-67357573 | Weak transcription Enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr17:67339400-67355200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr17:67347400-67352800 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
