Variant report

Variant	rs73998240
Chromosome Location	chr17:67353872-67353873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:16)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:16 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr17:67353860-67354010	HMEC	breast:	n/a	n/a
2	CTCF	chr17:67353860-67354010	HCM	heart:	n/a	n/a
3	RAD21	chr17:67353857-67354051	HepG2	liver:	n/a	n/a
4	MYC	chr17:67353813-67354013	MCF10A-Er-Src	breast:	n/a	n/a
5	CTCF	chr17:67353860-67354090	HVMF	connective:	n/a	n/a
6	RAD21	chr17:67353824-67354158	Hela-S3	cervix:	n/a	n/a
7	CTCF	chr17:67353837-67354165	GM12878	blood:	n/a	n/a
8	RAD21	chr17:67353824-67354109	HepG2	liver:	n/a	n/a
9	CEBPB	chr17:67353827-67354082	HepG2	liver:	n/a	n/a
10	RAD21	chr17:67353753-67354192	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCF	chr17:67353845-67354070	HepG2	liver:	n/a	n/a
12	CTCF	chr17:67353860-67354010	HEEpiC	esophagus:	n/a	n/a
13	CTCF	chr17:67353860-67354010	HRPEpiC	eye:	n/a	n/a
14	CTCF	chr17:67353860-67354010	GM06990	blood:	n/a	n/a
15	CEBPB	chr17:67353852-67354069	Hela-S3	cervix:	n/a	n/a
16	CTCF	chr17:67353841-67354092	A549	lung:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67348498..67350419-chr17:67353401..67355249,2	MCF-7	breast:
2	chr17:67353713..67354369-chr17:67391040..67391605,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs28678617	1.00[EUR][1000 genomes]
rs55987469	1.00[EUR][1000 genomes]
rs59236807	1.00[EUR][1000 genomes]
rs60034644	1.00[EUR][1000 genomes]
rs60545999	1.00[EUR][1000 genomes]
rs60997207	1.00[EUR][1000 genomes]
rs61673269	1.00[EUR][1000 genomes]
rs6501325	1.00[EUR][1000 genomes]
rs7207318	1.00[EUR][1000 genomes]
rs7212671	1.00[EUR][1000 genomes]
rs7217016	1.00[EUR][1000 genomes]
rs7223220	1.00[EUR][1000 genomes]
rs7226269	1.00[EUR][1000 genomes]
rs73363579	1.00[EUR][1000 genomes]
rs73363593	1.00[EUR][1000 genomes]
rs73363596	1.00[EUR][1000 genomes]
rs73363598	1.00[EUR][1000 genomes]
rs73998239	1.00[EUR][1000 genomes]
rs73998241	1.00[EUR][1000 genomes]
rs73998244	1.00[EUR][1000 genomes]
rs73998255	1.00[EUR][1000 genomes]
rs73998270	1.00[EUR][1000 genomes]
rs73998272	1.00[EUR][1000 genomes]
rs8076188	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833527	chr17:67240575-67400871	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv522420	chr17:67345358-67357573	Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67339400-67355200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr17:67352400-67358200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:67353600-67354200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr17:67353600-67355400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr17:67353800-67354000	Enhancers	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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