Variant report

Variant	rs73998270
Chromosome Location	chr17:67420762-67420763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs28678617	1.00[EUR][1000 genomes]
rs55987469	1.00[EUR][1000 genomes]
rs59236807	1.00[EUR][1000 genomes]
rs60034644	1.00[EUR][1000 genomes]
rs60545999	1.00[EUR][1000 genomes]
rs60997207	1.00[EUR][1000 genomes]
rs61673269	1.00[EUR][1000 genomes]
rs6501325	1.00[EUR][1000 genomes]
rs7207318	1.00[EUR][1000 genomes]
rs7212671	1.00[EUR][1000 genomes]
rs7217016	1.00[EUR][1000 genomes]
rs7223220	1.00[EUR][1000 genomes]
rs7226269	1.00[EUR][1000 genomes]
rs73363579	1.00[EUR][1000 genomes]
rs73363593	1.00[EUR][1000 genomes]
rs73363596	1.00[EUR][1000 genomes]
rs73363598	1.00[EUR][1000 genomes]
rs73998239	1.00[EUR][1000 genomes]
rs73998240	1.00[EUR][1000 genomes]
rs73998241	1.00[EUR][1000 genomes]
rs73998244	1.00[EUR][1000 genomes]
rs73998255	1.00[EUR][1000 genomes]
rs73998272	1.00[EUR][1000 genomes]
rs8076188	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520649	chr17:67420433-67440811	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67411400-67425000	Weak transcription	Pancreas	Pancrea
2	chr17:67411400-67425200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr17:67414000-67424200	Weak transcription	Fetal Muscle Leg	muscle
4	chr17:67414000-67429600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr17:67414000-67429800	Weak transcription	Brain Hippocampus Middle	brain
6	chr17:67414400-67421200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr17:67414400-67421800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr17:67414400-67424000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr17:67414400-67427800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr17:67414400-67429400	Weak transcription	Fetal Stomach	stomach
11	chr17:67414400-67430400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr17:67414400-67430600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr17:67414600-67421600	Weak transcription	A549	lung
14	chr17:67414600-67422400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr17:67414800-67422200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr17:67415400-67422000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr17:67417200-67424000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr17:67417600-67430000	Weak transcription	Brain Substantia Nigra	brain
19	chr17:67418600-67421000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr17:67418800-67421200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr17:67418800-67421800	Weak transcription	Spleen	Spleen
22	chr17:67419200-67421000	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr17:67419200-67426600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr17:67419400-67420800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr17:67419400-67421000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr17:67419400-67421000	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr17:67419400-67421400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr17:67419400-67421400	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr17:67419400-67422200	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr17:67419400-67423000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr17:67419600-67423200	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr17:67419800-67421000	Weak transcription	NH-A	brain
33	chr17:67419800-67422800	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr17:67419800-67430000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr17:67419800-67436600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr17:67420000-67420800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr17:67420000-67421400	Enhancers	HUVEC	blood vessel
38	chr17:67420000-67422200	Enhancers	H1 Cell Line	embryonic stem cell
39	chr17:67420000-67423600	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr17:67420000-67423600	Weak transcription	GM12878-XiMat	blood
41	chr17:67420000-67423600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr17:67420000-67424200	Weak transcription	Primary T cells from cord blood	blood
43	chr17:67420000-67447600	Weak transcription	Fetal Thymus	thymus
44	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
45	chr17:67420200-67420800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr17:67420200-67422800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr17:67420200-67424200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr17:67420200-67426800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr17:67420400-67420800	Enhancers	H9 Cell Line	embryonic stem cell
50	chr17:67420400-67420800	Enhancers	Skeletal Muscle Male	skeletal muscle

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