Variant report

Variant	rs55987469
Chromosome Location	chr17:67446843-67446844
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs28678617	1.00[EUR][1000 genomes]
rs59236807	1.00[EUR][1000 genomes]
rs60034644	1.00[EUR][1000 genomes]
rs60545999	1.00[EUR][1000 genomes]
rs60997207	1.00[EUR][1000 genomes]
rs61673269	1.00[EUR][1000 genomes]
rs6501325	1.00[EUR][1000 genomes]
rs7207318	1.00[EUR][1000 genomes]
rs7212671	1.00[EUR][1000 genomes]
rs7217016	1.00[EUR][1000 genomes]
rs7223220	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7226269	1.00[EUR][1000 genomes]
rs73363579	1.00[EUR][1000 genomes]
rs73363593	1.00[EUR][1000 genomes]
rs73363596	1.00[EUR][1000 genomes]
rs73363598	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73998239	1.00[EUR][1000 genomes]
rs73998240	1.00[EUR][1000 genomes]
rs73998241	1.00[EUR][1000 genomes]
rs73998244	1.00[EUR][1000 genomes]
rs73998255	1.00[EUR][1000 genomes]
rs73998270	1.00[EUR][1000 genomes]
rs73998272	1.00[EUR][1000 genomes]
rs8076188	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411610	chr17:67446834-67447039	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67420000-67447600	Weak transcription	Fetal Thymus	thymus
2	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
3	chr17:67425400-67454600	Weak transcription	Primary B cells from cord blood	blood
4	chr17:67440800-67458200	Weak transcription	Right Atrium	heart
5	chr17:67441400-67474600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr17:67441800-67447000	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr17:67442000-67447600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr17:67444000-67447000	Weak transcription	GM12878-XiMat	blood
9	chr17:67445000-67447800	Weak transcription	Lung	lung
10	chr17:67445000-67449200	Weak transcription	Small Intestine	intestine
11	chr17:67445200-67447000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr17:67445200-67447000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr17:67445200-67447200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr17:67445200-67447200	Weak transcription	Fetal Muscle Leg	muscle
15	chr17:67445200-67447200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr17:67445200-67447400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr17:67445200-67447600	Weak transcription	Psoas Muscle	Psoas
18	chr17:67445200-67447800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr17:67445200-67447800	Weak transcription	Fetal Muscle Trunk	muscle
20	chr17:67445200-67447800	Weak transcription	Pancreas	Pancrea
21	chr17:67445200-67452400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr17:67445200-67452600	Weak transcription	Primary T cells from cord blood	blood
23	chr17:67445200-67452800	Weak transcription	Spleen	Spleen
24	chr17:67445200-67457400	Weak transcription	Left Ventricle	heart
25	chr17:67445200-67463200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr17:67445400-67447200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr17:67445400-67447200	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr17:67445400-67447800	Weak transcription	Fetal Stomach	stomach
29	chr17:67445400-67456600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr17:67445400-67462400	Weak transcription	Fetal Intestine Small	intestine
31	chr17:67445600-67449200	Weak transcription	Fetal Intestine Large	intestine
32	chr17:67446200-67449000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr17:67446200-67449600	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr17:67446200-67452000	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr17:67446400-67447800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr17:67446400-67448000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr17:67446400-67448400	Enhancers	H1 Cell Line	embryonic stem cell
38	chr17:67446400-67448400	Enhancers	H9 Cell Line	embryonic stem cell
39	chr17:67446400-67448400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr17:67446400-67448400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr17:67446400-67448400	Enhancers	HUVEC	blood vessel
42	chr17:67446400-67449200	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr17:67446400-67449600	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr17:67446400-67450000	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr17:67446600-67447000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr17:67446600-67447000	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr17:67446600-67447000	Weak transcription	NH-A	brain
48	chr17:67446600-67447800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr17:67446600-67448200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr17:67446600-67449400	Enhancers	HUES64 Cell Line	embryonic stem cell

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