Variant report

Variant	rs6501325
Chromosome Location	chr17:67432835-67432836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs28678617	1.00[EUR][1000 genomes]
rs477847	1.00[MEX][hapmap]
rs520754	1.00[MEX][hapmap]
rs55987469	1.00[EUR][1000 genomes]
rs564426	1.00[MEX][hapmap]
rs59236807	1.00[EUR][1000 genomes]
rs60034644	1.00[EUR][1000 genomes]
rs60545999	1.00[EUR][1000 genomes]
rs60997207	1.00[EUR][1000 genomes]
rs61673269	1.00[EUR][1000 genomes]
rs707243	1.00[MEX][hapmap]
rs7207318	1.00[EUR][1000 genomes]
rs7212671	1.00[EUR][1000 genomes]
rs7217016	1.00[EUR][1000 genomes]
rs7223220	1.00[EUR][1000 genomes]
rs7226269	0.90[ASW][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73363579	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73363593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73363596	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73363598	1.00[EUR][1000 genomes]
rs73998239	1.00[EUR][1000 genomes]
rs73998240	1.00[EUR][1000 genomes]
rs73998241	1.00[EUR][1000 genomes]
rs73998244	1.00[EUR][1000 genomes]
rs73998255	1.00[EUR][1000 genomes]
rs73998270	1.00[EUR][1000 genomes]
rs73998272	1.00[EUR][1000 genomes]
rs8076188	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520649	chr17:67420433-67440811	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67419800-67436600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr17:67420000-67447600	Weak transcription	Fetal Thymus	thymus
3	chr17:67420000-67498200	Weak transcription	Thymus	Thymus
4	chr17:67424400-67443800	Weak transcription	Brain Angular Gyrus	brain
5	chr17:67424600-67435200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr17:67425400-67454600	Weak transcription	Primary B cells from cord blood	blood
7	chr17:67427000-67435600	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr17:67427000-67444000	Weak transcription	Left Ventricle	heart
9	chr17:67427000-67446800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr17:67427400-67441400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr17:67427800-67435400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr17:67428000-67434800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr17:67428200-67434200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr17:67428200-67436000	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr17:67428200-67443800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr17:67430200-67433000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr17:67430200-67435800	Weak transcription	Primary T cells from cord blood	blood
18	chr17:67430600-67443800	Weak transcription	Small Intestine	intestine
19	chr17:67430800-67434800	Weak transcription	Fetal Muscle Leg	muscle
20	chr17:67430800-67435600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr17:67430800-67436400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr17:67430800-67438800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr17:67430800-67440600	Weak transcription	Right Atrium	heart
24	chr17:67430800-67440800	Weak transcription	Psoas Muscle	Psoas
25	chr17:67430800-67443800	Weak transcription	Colonic Mucosa	Colon
26	chr17:67430800-67443800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr17:67431000-67433600	Weak transcription	HMEC	breast
28	chr17:67431200-67434800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr17:67431200-67435400	Weak transcription	Fetal Lung	lung
30	chr17:67431200-67435600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr17:67431200-67438000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr17:67431200-67438800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr17:67431200-67443800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr17:67432200-67433000	Enhancers	H9 Cell Line	embryonic stem cell
35	chr17:67432200-67433000	Enhancers	iPS-15b Cell Line	embryonic stem cell
36	chr17:67432200-67433000	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr17:67432400-67443600	Weak transcription	Fetal Stomach	stomach
38	chr17:67432800-67437600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr17:67432800-67437800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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