Variant report

Variant	rs60545999
Chromosome Location	chr17:67417279-67417280
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:67411772..67413829-chr17:67415713..67418536,2	MCF-7	breast:
2	chr17:67415729..67418090-chr17:67437901..67439947,2	K562	blood:

rs_ID	r²[population]
rs11868981	1.00[ASN][1000 genomes]
rs28678617	1.00[EUR][1000 genomes]
rs55987469	1.00[EUR][1000 genomes]
rs59236807	1.00[EUR][1000 genomes]
rs60034644	1.00[EUR][1000 genomes]
rs60162800	1.00[ASN][1000 genomes]
rs60997207	1.00[EUR][1000 genomes]
rs61673269	1.00[EUR][1000 genomes]
rs62080889	1.00[ASN][1000 genomes]
rs6501325	1.00[EUR][1000 genomes]
rs7207318	1.00[EUR][1000 genomes]
rs7212671	1.00[EUR][1000 genomes]
rs7217016	1.00[EUR][1000 genomes]
rs7223220	1.00[EUR][1000 genomes]
rs7226269	1.00[EUR][1000 genomes]
rs72853630	1.00[ASN][1000 genomes]
rs73363579	1.00[EUR][1000 genomes]
rs73363593	1.00[EUR][1000 genomes]
rs73363596	1.00[EUR][1000 genomes]
rs73363598	1.00[EUR][1000 genomes]
rs73998239	1.00[EUR][1000 genomes]
rs73998240	1.00[EUR][1000 genomes]
rs73998241	1.00[EUR][1000 genomes]
rs73998244	1.00[EUR][1000 genomes]
rs73998255	1.00[EUR][1000 genomes]
rs73998270	1.00[EUR][1000 genomes]
rs73998272	1.00[EUR][1000 genomes]
rs8076188	1.00[EUR][1000 genomes]

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67411200-67418600	Weak transcription	Spleen	Spleen
2	chr17:67411400-67425000	Weak transcription	Pancreas	Pancrea
3	chr17:67411400-67425200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:67412600-67419000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr17:67412600-67419200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr17:67413200-67417600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:67413200-67418000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr17:67413200-67419400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr17:67413200-67419600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr17:67413400-67419400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr17:67413800-67419400	Weak transcription	Primary hematopoietic stem cells	blood
12	chr17:67414000-67418800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr17:67414000-67419400	Weak transcription	Fetal Thymus	thymus
14	chr17:67414000-67419400	Weak transcription	Small Intestine	intestine
15	chr17:67414000-67419600	Weak transcription	Thymus	Thymus
16	chr17:67414000-67424200	Weak transcription	Fetal Muscle Leg	muscle
17	chr17:67414000-67429600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr17:67414000-67429800	Weak transcription	Brain Hippocampus Middle	brain
19	chr17:67414200-67418600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr17:67414200-67420000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr17:67414400-67419400	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr17:67414400-67419400	Weak transcription	Primary T cells from cord blood	blood
23	chr17:67414400-67419400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr17:67414400-67419400	Weak transcription	NH-A	brain
25	chr17:67414400-67419600	Weak transcription	Psoas Muscle	Psoas
26	chr17:67414400-67419800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr17:67414400-67420200	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr17:67414400-67420600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr17:67414400-67421200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr17:67414400-67421800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr17:67414400-67424000	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr17:67414400-67427800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr17:67414400-67429400	Weak transcription	Fetal Stomach	stomach
34	chr17:67414400-67430400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr17:67414400-67430600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr17:67414600-67419400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr17:67414600-67421600	Weak transcription	A549	lung
38	chr17:67414600-67422400	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr17:67414800-67419400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr17:67414800-67420000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr17:67414800-67422200	Weak transcription	Duodenum Mucosa	Duodenum
42	chr17:67415000-67418000	Enhancers	HUVEC	blood vessel
43	chr17:67415000-67419400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr17:67415000-67419400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr17:67415400-67418800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr17:67415400-67419600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr17:67415400-67422000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr17:67415600-67420400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr17:67415800-67418600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr17:67415800-67419400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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