Variant report

Variant	rs7217400
Chromosome Location	chr17:15561873-15561874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15561055..15565103-chr17:15565320..15567687,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1901691	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7212119	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7212288	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7213845	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73272118	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73272121	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73272123	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv1059056	chr17:15294011-15856861	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv457695	chr17:15447364-15611495	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv574462	chr17:15447364-15611495	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	nsv907704	chr17:15542933-15567196	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv934185	chr17:15552960-16551197	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	190 gene(s)	inside rSNPs	diseases
8	nsv520426	chr17:15554561-15647723	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
9	nsv1062951	chr17:15561070-15890644	Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15552200-15564600	Weak transcription	HepG2	liver
2	chr17:15554600-15571200	Weak transcription	Liver	Liver
3	chr17:15555000-15563200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr17:15555000-15563200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr17:15555000-15587000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr17:15555000-15587000	Weak transcription	Gastric	stomach
7	chr17:15555200-15562200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr17:15555200-15562200	Weak transcription	Left Ventricle	heart
9	chr17:15555200-15562200	Weak transcription	Pancreas	Pancrea
10	chr17:15555200-15564400	Weak transcription	GM12878-XiMat	blood
11	chr17:15555200-15567000	Weak transcription	Lung	lung
12	chr17:15555200-15567200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr17:15555200-15587000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr17:15555400-15562200	Weak transcription	Right Atrium	heart
15	chr17:15555400-15563200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr17:15555400-15564400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr17:15555400-15564600	Weak transcription	Primary B cells from peripheral blood	blood
18	chr17:15555400-15565200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr17:15555400-15566800	Weak transcription	Duodenum Mucosa	Duodenum
20	chr17:15555400-15567000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr17:15555400-15568200	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr17:15555400-15568200	Weak transcription	Rectal Smooth Muscle	rectum
23	chr17:15555400-15569000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr17:15555400-15576800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr17:15555400-15585800	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr17:15555400-15586600	Weak transcription	Brain Angular Gyrus	brain
27	chr17:15555400-15586600	Weak transcription	Thymus	Thymus
28	chr17:15555400-15587000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr17:15555600-15562400	Weak transcription	Fetal Heart	heart
30	chr17:15555600-15563000	Weak transcription	Fetal Stomach	stomach
31	chr17:15555600-15563200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr17:15555600-15564600	Weak transcription	Brain Hippocampus Middle	brain
33	chr17:15555600-15565800	Weak transcription	Stomach Smooth Muscle	stomach
34	chr17:15555600-15566400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr17:15555600-15566400	Weak transcription	NHLF	lung
36	chr17:15555600-15567000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr17:15555600-15586800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr17:15555600-15586800	Weak transcription	NHDF-Ad	bronchial
39	chr17:15555600-15587000	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr17:15555600-15587200	Weak transcription	Aorta	Aorta
41	chr17:15555800-15565800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr17:15556000-15563800	Enhancers	Placenta Amnion	Placenta Amnion
43	chr17:15556600-15587000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr17:15557800-15564800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr17:15558200-15563600	Enhancers	Stomach Mucosa	stomach
46	chr17:15558400-15562600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr17:15558600-15565400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr17:15558800-15562600	Weak transcription	Fetal Lung	lung
49	chr17:15558800-15562800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr17:15558800-15564400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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