Variant report

Variant	rs7239046
Chromosome Location	chr18:40383222-40383223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11872156	1.00[YRI][hapmap]
rs11876408	1.00[YRI][hapmap]
rs11877260	1.00[YRI][hapmap]
rs59819966	0.97[AFR][1000 genomes]
rs60655873	1.00[AFR][1000 genomes]
rs60794152	1.00[AFR][1000 genomes]
rs73470083	0.84[AFR][1000 genomes]
rs73482696	0.97[AFR][1000 genomes]
rs73482700	0.97[AFR][1000 genomes]
rs73484667	0.97[AFR][1000 genomes]
rs73484670	0.97[AFR][1000 genomes]
rs73484678	0.97[AFR][1000 genomes]
rs73486758	1.00[AFR][1000 genomes]
rs8085497	0.97[AFR][1000 genomes]
rs8098570	1.00[YRI][hapmap];0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40382000-40384600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr18:40382600-40387600	Weak transcription	Fetal Lung	lung
3	chr18:40383000-40384200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr18:40383200-40384200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr18:40383200-40384200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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