Variant report

Variant	rs73484670
Chromosome Location	chr18:40346045-40346046
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs59819966	1.00[AFR][1000 genomes]
rs60655873	0.97[AFR][1000 genomes]
rs60794152	0.97[AFR][1000 genomes]
rs7239046	0.97[AFR][1000 genomes]
rs73470083	0.82[AFR][1000 genomes]
rs73482696	1.00[AFR][1000 genomes]
rs73482700	1.00[AFR][1000 genomes]
rs73484667	1.00[AFR][1000 genomes]
rs73484678	1.00[AFR][1000 genomes]
rs73486758	0.97[AFR][1000 genomes]
rs8085497	1.00[AFR][1000 genomes]
rs8098570	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40344400-40346200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr18:40345400-40346600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr18:40346000-40348400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links