Variant report

Variant	rs7239672
Chromosome Location	chr18:45578128-45578129
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs4072891	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4359513	0.81[EUR][1000 genomes]
rs4468699	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4528649	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4620750	0.82[CHB][hapmap]
rs4940202	0.91[EUR][1000 genomes]
rs4940217	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67466227	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67927311	0.82[EUR][1000 genomes]
rs7226941	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7243697	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7244127	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7245101	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8099419	0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs9945580	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9951809	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9958955	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9960301	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9960608	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45558400-45578400	Weak transcription	Ovary	ovary
2	chr18:45573800-45578800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr18:45573800-45579000	Weak transcription	Fetal Kidney	kidney
4	chr18:45573800-45596400	Weak transcription	Aorta	Aorta
5	chr18:45574200-45578200	Enhancers	Esophagus	oesophagus
6	chr18:45574200-45581400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr18:45576000-45578200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr18:45576000-45578200	Enhancers	Stomach Mucosa	stomach
9	chr18:45576800-45580600	Weak transcription	Left Ventricle	heart
10	chr18:45577000-45601800	Weak transcription	Gastric	stomach
11	chr18:45577200-45579000	Weak transcription	Fetal Muscle Leg	muscle
12	chr18:45577200-45579400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr18:45577200-45580200	Weak transcription	Colonic Mucosa	Colon
14	chr18:45577200-45595200	Weak transcription	Lung	lung
15	chr18:45577600-45578800	Weak transcription	Spleen	Spleen
16	chr18:45577600-45579200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr18:45577800-45580200	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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