Variant report

Variant	rs4359513
Chromosome Location	chr18:45565320-45565321
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45563994..45565756-chr18:45579042..45580612,2	MCF-7	breast:
2	chr18:45563962..45566776-chr18:45685192..45687168,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12605978	0.90[YRI][hapmap];0.86[AFR][1000 genomes]
rs4468699	0.89[EUR][1000 genomes]
rs4620750	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.85[YRI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4939701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4940197	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4940202	0.88[CHB][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4940217	0.91[EUR][1000 genomes]
rs67466227	0.81[EUR][1000 genomes]
rs7226941	0.91[EUR][1000 genomes]
rs7239672	0.81[EUR][1000 genomes]
rs8093883	0.93[CEU][hapmap];0.88[CHB][hapmap];0.87[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8099419	0.81[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9945580	0.88[EUR][1000 genomes]
rs9951809	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9958955	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9960301	0.90[EUR][1000 genomes]
rs9960608	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45554200-45567800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr18:45554400-45567600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr18:45557400-45570000	Weak transcription	Fetal Intestine Small	intestine
4	chr18:45558400-45578400	Weak transcription	Ovary	ovary
5	chr18:45559000-45565600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr18:45560200-45566400	Genic enhancers	Esophagus	oesophagus
7	chr18:45562600-45566800	Weak transcription	Aorta	Aorta
8	chr18:45563800-45565800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr18:45564200-45565800	Weak transcription	Hela-S3	cervix
10	chr18:45564200-45566800	Weak transcription	Dnd41	blood
11	chr18:45564200-45568000	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr18:45564400-45565600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr18:45564400-45567400	Strong transcription	Gastric	stomach
14	chr18:45564400-45568800	Weak transcription	Right Atrium	heart
15	chr18:45564400-45576000	Weak transcription	Stomach Mucosa	stomach
16	chr18:45564600-45565400	Enhancers	Spleen	Spleen
17	chr18:45564600-45566800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr18:45564600-45567000	Weak transcription	Pancreas	Pancrea
19	chr18:45564600-45569200	Weak transcription	Fetal Muscle Trunk	muscle
20	chr18:45564800-45565800	Weak transcription	Fetal Muscle Leg	muscle
21	chr18:45564800-45567200	Strong transcription	Fetal Stomach	stomach
22	chr18:45564800-45572000	Weak transcription	Placenta	Placenta
23	chr18:45565200-45565400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr18:45565200-45567200	Strong transcription	Colonic Mucosa	Colon
25	chr18:45565200-45567200	Weak transcription	Lung	lung
26	chr18:45565200-45567400	Strong transcription	Rectal Mucosa Donor 29	rectum

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