Variant report

Variant	rs9945580
Chromosome Location	chr18:45581595-45581596
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45579327..45582166-chr18:45588649..45590340,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs4072891	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4359513	0.88[EUR][1000 genomes]
rs4468699	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4528649	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4620750	0.87[EUR][1000 genomes]
rs4939701	0.87[EUR][1000 genomes]
rs4940197	0.84[EUR][1000 genomes]
rs4940217	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67466227	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7226941	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7239672	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7243697	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7244127	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7245101	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8093883	0.87[EUR][1000 genomes]
rs9951809	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9958955	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9960301	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9960608	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45573800-45596400	Weak transcription	Aorta	Aorta
2	chr18:45577000-45601800	Weak transcription	Gastric	stomach
3	chr18:45577200-45595200	Weak transcription	Lung	lung
4	chr18:45578200-45586000	Weak transcription	Stomach Mucosa	stomach
5	chr18:45579600-45585800	Weak transcription	Ovary	ovary
6	chr18:45580200-45581800	Enhancers	Placenta	Placenta
7	chr18:45580800-45585200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr18:45580800-45586600	Weak transcription	Colonic Mucosa	Colon
9	chr18:45581000-45581800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr18:45581000-45582000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr18:45581000-45584200	Weak transcription	Esophagus	oesophagus
12	chr18:45581000-45585200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr18:45581000-45585200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr18:45581000-45585800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr18:45581000-45585800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr18:45581000-45585800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr18:45581000-45585800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr18:45581400-45585200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr18:45581400-45585200	Weak transcription	Fetal Kidney	kidney
20	chr18:45581400-45585800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr18:45581400-45586800	Weak transcription	Spleen	Spleen

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